RetrogeneDB ID: | retro_tsyr_1572 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_49405:2284..2867(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C12orf29 | ||
Ensembl ID: | ENSTSYG00000014665 | ||
Aliases: | None | ||
Description: | chromosome 12 open reading frame 29 [Source:HGNC Symbol;Acc:25322] |
Percent Identity: | 89.9 % |
Parental protein coverage: | 59.94 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | NPVPDENGHIPGWVP-VEKNNKQYCWHSSVINYEFEIALVLKHHPDDPGVLEISAVPLSDLLEQTLELIG |
.PVPDENGHIPGWV..VEK.NKQYCWHSSVINYEFEIALV.KHHPDDPGVLEISAVPLS.LLEQTLELIG | |
Retrocopy | DPVPDENGHIPGWVQ<VEKKNKQYCWHSSVINYEFEIALVIKHHPDDPGVLEISAVPLSYLLEQTLELIG |
Parental | TNINGNPYGLGSKKHPLHFLIPHGAFQIRTLPTLKHNDLLSWFEGCREGKIEGIVWHCSDGCLIKVHRHH |
TNINGNPYGLGSKKHPLH.LIPHGAFQIRTLPTLKHND...WFEGCREGKIE.IVWHCSDGCLIKVH.HH | |
Retrocopy | TNINGNPYGLGSKKHPLHLLIPHGAFQIRTLPTLKHNDVFYWFEGCREGKIEEIVWHCSDGCLIKVHHHH |
Parental | LGLCWPIPDTYMNSKPVIINMNLNKYDYVFDTKCLFNHFLK-IDNQKFGRLKDIKLDV |
LGLCWPIP.TYMNSKPVIINMNLNKYDYVFDT.CL...FLK..DNQKFGRLKDI.LDV | |
Retrocopy | LGLCWPIPNTYMNSKPVIINMNLNKYDYVFDTVCLI-IFLK<KDNQKFGRLKDIMLDV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011011 | 1 retrocopy | |
Homo sapiens | ENSG00000133641 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005986 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000013286 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015860 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005396 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005277 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000006973 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005256 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014665 | 1 retrocopy |
retro_tsyr_1572 ,
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