RetrogeneDB ID: | retro_tsyr_1091 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_30327:11377..12658(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPD1 | ||
Ensembl ID: | ENSTSYG00000000513 | ||
Aliases: | None | ||
Description: | heat shock 60kDa protein 1 (chaperonin) [Source:HGNC Symbol;Acc:5261] |
Percent Identity: | 93.47 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MLRLPAVLRQMRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGS |
MLRLPAVLRQ.R.VSRALAPHLTR.YAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVI.EQSWGS | |
Retrocopy | MLRLPAVLRQIRLVSRALAPHLTRDYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIFEQSWGS |
Parental | PKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEI |
PKVTKDG.TVAKSIDLKDKYKNIGAKLVQDVANNTN.EAGDGTTTATVLA.SIAKEGFEKISKGANPVEI | |
Retrocopy | PKVTKDGMTVAKSIDLKDKYKNIGAKLVQDVANNTNDEAGDGTTTATVLAHSIAKEGFEKISKGANPVEI |
Parental | RRGVMLAVDAVIVELKKQSKPVTTPEEIAQVATISANGDKEIGSIISDAMKKVGRKGVITVKDGKTLNDE |
RRGVMLAVDAVIVELKKQSKPVTTPEEIAQVATIS.NGDKEIG.IISDAMKK.GRKGVITVKDGK.LNDE | |
Retrocopy | RRGVMLAVDAVIVELKKQSKPVTTPEEIAQVATISTNGDKEIGNIISDAMKKFGRKGVITVKDGKKLNDE |
Parental | LEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDG |
LEI.EGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQ.IVPALEIA.AH.KPLVIIAED.DG | |
Retrocopy | LEITEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQTIVPALEIASAHHKPLVIIAEDTDG |
Parental | EALSTLV-LNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDIQPHDLGKV-GEV |
.ALSTL..LNRLKVGLQ.VAVKAPGF.DNRKNQLKDMAIATGGAVFGEE.LTLNLED.QPHDL.KV.GEV | |
Retrocopy | GALSTLA<LNRLKVGLQFVAVKAPGFADNRKNQLKDMAIATGGAVFGEERLTLNLEDVQPHDLRKV>GEV |
Parental | IVTKDDAMLLKGKGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNE-E |
IVTKDDAMLLKGKGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNE.. | |
Retrocopy | IVTKDDAMLLKGKGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKK |
Parental | DRVTDALNA |
DRVTDAL.A | |
Retrocopy | DRVTDALDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |