RetrogeneDB ID: | retro_etel_1440 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_265919:4770..5568(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000009184 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.84 % |
Parental protein coverage: | 51.84 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGF |
GR.VIIE.SWGSP.VTKD.VTVAKSIDLKDKYKN.G..LVQDVA.NTNEEAGDGT.T.T.LARS.AKEGF | |
Retrocopy | GRMVIIELSWGSPTVTKDSVTVAKSIDLKDKYKNTGSQLVQDVASNTNEEAGDGTATDTLLARSSAKEGF |
Parental | EKISK-GANPVEIRRGVMLAVDAVIAELKKQSKPVTTPDEIAQVATISANGDKEIGTIISDAMKKVGRKG |
EK.SK.GAN.VEIRR.V.LAV.AVIAELKKQ.KPVTTP..I.QVATISANGDKEIGTI.SDAM.KVGR.G | |
Retrocopy | EKVSK<GAN*VEIRRDVLLAVVAVIAELKKQFKPVTTPETIVQVATISANGDKEIGTILSDAMTKVGRQG |
Parental | VITVKDGKTLNDELEIIEGMKFDRGYISPYFINTAKGQ-KCEFQDAYVLLSEKKISSIQSIVPAQEIANA |
VITVKDGKTLN..LEIIEGMKFD...ISPYFINTAKGQ.KCEFQDAYVLLSEKKISS..SIVPA.EIA.A | |
Retrocopy | VITVKDGKTLNEDLEIIEGMKFDQSCISPYFINTAKGQ>KCEFQDAYVLLSEKKISSVWSIVPALEIASA |
Parental | HRKPLVIXXXXXXXXXXXXXXXXXLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVF |
H.KPLVI.................LKV.L..V.VKAP..GDNRKNQ.K..AI.TGG..F | |
Retrocopy | HCKPLVIIAEDVDGEALSTLILNRLKVDLW-VSVKAPASGDNRKNQFKGRAITTGGSNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |