RetrogeneDB ID: | retro_tsyr_1097 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_30429:14516..14978(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTSYG00000008622 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SC5D | ||
Ensembl ID: | ENSTSYG00000011139 | ||
Aliases: | None | ||
Description: | sterol-C5-desaturase [Source:HGNC Symbol;Acc:10547] |
Percent Identity: | 85.71 % |
Parental protein coverage: | 51.01 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MDLVLNAADYHFFTPYIYPATWPEDDIFRQTISLLIVTNVGAYILYFICATLSYYFVFDHSLMKHPQFLK |
MDLVLNAAD.HFFTPYIYPATWPEDDIFRQTISLLIVTNVGAYILYFICATLSYYFVFDHSLMKHPQFLK | |
Retrocopy | MDLVLNAADDHFFTPYIYPATWPEDDIFRQTISLLIVTNVGAYILYFICATLSYYFVFDHSLMKHPQFLK |
Parental | XXXXXXXXXXXQSLPWISI---TVFLLELRGYSKLYDNIGEFPYGWFQFLVSATSFLFFTDMLIYWIHRG |
...........QSLPWISI.....FLLELRGYSKLYDNIGEFPYG.FQFLVS..SFLFFTDMLIYWIHRG | |
Retrocopy | NQVYQEIMFTVQSLPWISIPTVLLFLLELRGYSKLYDNIGEFPYG*FQFLVSVISFLFFTDMLIYWIHRG |
Parental | LHHKLVSKRIHKPH |
LHHKLV.KR.HKPH | |
Retrocopy | LHHKLVYKRTHKPH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019246 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000011805 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007436 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000013028 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005754 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000003219 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008946 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000490 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000011139 | 1 retrocopy |
retro_tsyr_1097 ,
|
Tursiops truncatus | ENSTTRG00000006908 | 1 retrocopy |