Parental gene:

SC5D, ENSCAFG00000011805

Aliases:None
Description:sterol-C5-desaturase [Source:HGNC Symbol;Acc:10547]
Organism:Dog (Canis familiaris)
Coordinates:5:12763285..12774543(-)


>ENSCAFG00000011805
ATGCCGCCGGCCGCTGATTGGCTGGCGGCGCCGCCGCTGGGAGCGCGTGCCCGGCCACGCCCCCCAGCCCTGCCCGCCCG
CCCGCCGCCCAGTGGCCCCGCAGCCTGCGACCCCGCGGACGCCGAGTGGGCCGCGCGCTCCGGAGGGGCTAAGATGGATC
TTGTACTCAGTGCTGCAGATTATTATTTTTTTACACCGTACATCTATCCAGCCTCATGGTCTGAGGATGACATCTTCCGA
CAAACTATTAGTCTCCTGATTGTGACAAATCTTGGTGCTTATATCCTTTATTTCTTCTTTGCAACGCTGAGCTATTACTT
TGTCTATGATCATTCATTGATGAAGCATCCACAATTTTTAAAGAATCAAGTCTATAGAGAAATTATGTTTACTGTCCAGT
CATTGCCGTGGATTAGTATTCCCACCGTATTACTATTCCTGCTGGAGTTGAGAGGTTACAGCAAATTATATGATGACATA
GGAGAGTTTCCCAGTGGCTGGTTTCGCCTCATTATTAGTATACTGTCCTTCCTCTTTTTCACGGACATGCTGATCTACTG
GATTCACAGAGGCCTTCATCATAGACTTGTGTATAAGCGCATACACAAACCTCATCATCTCTGGAAGATTCCTACTCCAT
TTGCAAGTCATGCTTTTCACCCTGTGGATGGCTTCCTTCAGAGTCTACCTTACCATATATACCCTTTTATCTTCCCATTA
CACAAAGTGGTTTACTTAAGTTTATACATCTTGGTTAATATCTGGACAATTTCCATTCATGATGGTGATTTCCGTGTTCC
CCAAATCTTAAGGCCATTTATTAATGGCTCAGCCCATCATACAGACCACCACATGTTCTTCGACTATAACTATGGACAGT
ATTTCACTTTGTGGGATAGAATTGGAGGCTCGTTCAAAAATCCTTCCTCCTTTGAAGGGAAGGGACCACTTAGTTATGTG
AAGAAGATGACAGAAGAAAAGTGCAACACCCATACAAAAAATGGTTGTAAAAATGAAAAATTATTCAGTGGAGAGCTTAC
AAAGACTGAGTAG

Library Parental gene expression (RPM)
SRP012049_cerebellum 27 .17 RPM
SRP017611_brain 35 .89 RPM
SRP017611_kidney 26 .55 RPM
SRP017611_liver 61 .56 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019246 ortholog_one2one 1 retrogene
retro_btau_813,
Callithrix jacchus ENSCJAG00000007436 ortholog_one2one 1 retrogene
retro_cjac_1911,
Monodelphis domestica ENSMODG00000013028 ortholog_one2one 1 retrogene
retro_mdom_1086,
Mustela putorius furo ENSMPUG00000005754 ortholog_one2one 1 retrogene
retro_mputfur_484,
Ochotona princeps ENSOPRG00000003219 ortholog_one2one 1 retrogene
retro_opri_1143,
Ictidomys tridecemlineatus ENSSTOG00000008946 ortholog_one2one 1 retrogene
retro_itri_964,
Tupaia belangeri ENSTBEG00000000490 ortholog_one2one 1 retrogene
retro_tbel_4326,
Tarsius syrichta ENSTSYG00000011139 ortholog_one2one 1 retrogene
retro_tsyr_1097,
Tursiops truncatus ENSTTRG00000006908 ortholog_one2one 1 retrogene
retro_ttru_777,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_291 79.43 59.14
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Download FASTA sequences of all ENSCAFG00000011805 retrocopies