RetrogeneDB ID: | retro_tsyr_1155 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_327798:88..830(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COQ2 | ||
Ensembl ID: | ENSTSYG00000013801 | ||
Aliases: | None | ||
Description: | coenzyme Q2 4-hydroxybenzoate polyprenyltransferase [Source:HGNC Symbol;Acc:25223] |
Percent Identity: | 61.9 % |
Parental protein coverage: | 68.32 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | LAAEQLCFPDSCRLSLVGTGAVL-MRATGCTFNDLRDRDYDERVTRTANRPIAAGDISTLQSFVFLGGQL |
LA.E...FPD.C.LSL.GTG.V..M.A.GCT.N....R..DER..R..N.P.A.GDISTL.SFVFLGG.. | |
Retrocopy | LATEPGGFPDWCMLSLFGTGTVQ<MHAAGCTVNGM*NRHCDERNSRIPNLPRATGDISTLLSFVFLGGS* |
Parental | TLALGVLLCLNYYSITLGAASLLLVVTYPLMKRITYWPQLVL-GLTFNWGALLGWSAVKGSCEPSICLPL |
....G.LLCL......L.AASLLLV..YP.MKR.T..P.LVL.GLTF.W.ALLGWS..KGSCEP..CL.. | |
Retrocopy | PWLQGFLLCLSCSILSLRAASLLLVYSYPIMKRETQ*PLLVL<GLTFKWDALLGWSVIKGSCEPFVCLFI |
Parental | YFSGVMWTLIYDTIYAHQDKRDDALIGLKSTALRFGEDTKLWLRGFGLAMLGALGMVGVNSSQTIPYYVA |
..S.V...L...T..AHQDKRDD..IGLKS..L.FGEDTKLWL..F....LGALG.V..NSSQT.PYY.A | |
Retrocopy | FWSHVDTHLC--TVCAHQDKRDDTVIGLKSMVLWFGEDTKLWLDNFVTVILGALGLVVMNSSQTSPYYAA |
Parental | LVVVGAHLAHQIYTLDIHRPEDCWDKFASN-TIGLR-FLGIV |
L..VGA.LAHQ.YTL.IHRPED.WDKF.SN.T..L..FLGIV | |
Retrocopy | LGTVGAQLAHQFYTLNIHRPEDYWDKFTSNKTLELTVFLGIV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005006 | 1 retrocopy | |
Bos taurus | ENSBTAG00000005744 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011458 | 1 retrocopy | |
Equus caballus | ENSECAG00000012542 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015267 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029319 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013801 | 30 retrocopies |
retro_tsyr_1015, retro_tsyr_1155 , retro_tsyr_1173, retro_tsyr_1180, retro_tsyr_1207, retro_tsyr_1235, retro_tsyr_1327, retro_tsyr_1335, retro_tsyr_1385, retro_tsyr_1451, retro_tsyr_1491, retro_tsyr_1646, retro_tsyr_1709, retro_tsyr_1742, retro_tsyr_2015, retro_tsyr_2062, retro_tsyr_2087, retro_tsyr_2136, retro_tsyr_2146, retro_tsyr_466, retro_tsyr_513, retro_tsyr_533, retro_tsyr_54, retro_tsyr_548, retro_tsyr_607, retro_tsyr_619, retro_tsyr_654, retro_tsyr_776, retro_tsyr_839, retro_tsyr_995,
|
Tursiops truncatus | ENSTTRG00000005647 | 1 retrocopy |