RetrogeneDB ID: | retro_tsyr_1782 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_583437:500..738(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPF | ||
Ensembl ID: | ENSTSYG00000006837 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide F [Source:HGNC Symbol;Acc:11162] |
Percent Identity: | 88.75 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KPFLNGL-GKPVIMKLKWGKEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEE |
KPFL.GL.GKPV..KLKWG..YKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCN.VLYIRGV.E | |
Retrocopy | KPFLSGLTGKPVMVKLKWGMKYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNSVLYIRGVKE |
Parental | EEED-GEMRE |
EEED.GEMRE | |
Retrocopy | EEED>GEMRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002166 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000006395 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000002705 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000013509 | 4 retrocopies | |
Felis catus | ENSFCAG00000029966 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000017426 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008091 | 3 retrocopies | |
Pelodiscus sinensis | ENSPSIG00000016462 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000012294 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006837 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000012759 | 4 retrocopies |