RetrogeneDB ID: retro_tsyr_26

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_424204:592..1027(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSTSYG00000012598
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: STMN2
• Ensembl ID: ENSTSYG00000014759
• Aliases: None
• Description: stathmin-like 2 [Source:HGNC Symbol;Acc:10577]

Sequence

>retro_tsyr_26
ATTCAGGTGAAAGAACTGGAGAAGCGTGCCTCAGGCCAGGCTTTTGAGCTTATTCTCAGCCCTCAGTCAAAAGAATCTGT
TCCAGAATTCCCCCTTTCCCCTCCAAAGAAGAAGGATCTTTCCCTGGAGGAAATTCAGAAGAAATTAGAAGCTGCAGAAG
AAAGACGCAAGTCCCATGAAGCGGAAGTCTTGAAGCAGCTTGCTGAGAAACGAGAGCATGAGAAAGAAGTGCTCCAGAAA
GCAGCAGAGGAAAACAACAACTTCAGTAAAATGGTGGAGGAGAAACTGACCCACAAGATGGAAGCTAACAAAGAGAACCG
AGAGGCACAAATGGCTGCCAAACTGGAGCGTTTGCGAGAGAAGGATAAGCACGTTGAAGAAGTGCGGAAGAACAAAGAAT
CCAAAGATCCTGCTGATGAGACTGAGGCTGACTAA

Alignment

ORF - retro_tsyr_26 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.68 %
• Parental protein coverage: 74.3 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEVKQINKRASGQAFELILKPPSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEK
          ..VK...KRASGQAFELIL.P.S..S.....L..PKKKDLSLEEIQKKLEAAEERRKS.EA.VLKQLAEK
Retrocopy IQVKELEKRASGQAFELILSPQSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEK

Parental  REHEREVLQKALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKE
          REHE.EVLQKA.EENNNFSKM.EEKL..KME..KENREA..AA..ERL.EK..H..EVR.NKE
Retrocopy REHEKEVLQKAAEENNNFSKMVEEKLTHKMEANKENREAQMAAKLERLREKDKHVEEVRKNKE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_26 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000003373	3 retrocopies	retro_dnov_2381, retro_dnov_545, retro_dnov_831,
Mustela putorius furo	ENSMPUG00000001863	1 retrocopy	retro_mputfur_68,
Otolemur garnettii	ENSOGAG00000027869	2 retrocopies	retro_ogar_2664, retro_ogar_330,
Oryzias latipes	ENSORLG00000008251	1 retrocopy	retro_olat_37,
Sorex araneus	ENSSARG00000010989	1 retrocopy	retro_sara_756,
Ictidomys tridecemlineatus	ENSSTOG00000025094	2 retrocopies	retro_itri_1012, retro_itri_1423,
Tarsius syrichta	ENSTSYG00000014759	1 retrocopy	retro_tsyr_26 ,