RetrogeneDB ID: retro_ttru_1522

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_115256:62201..62519(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: LYPLA2
• Ensembl ID: ENSTTRG00000016127
• Aliases: None
• Description: lysophospholipase II [Source:HGNC Symbol;Acc:6738]

Sequence

>retro_ttru_1522
TCGGATGCTGCCACTGTGTCTGGAGCTGAGCAAGAAACAGCTGCGGTTATTTTTTTACATGGCCTTGGAGACACAGGGCA
CAGCTGCGCTGACGCCCTCTCCACCCTCCGGCTCCCTTACGTCAAGTACCCCTGTCCCCTTGCGCCTCGGACCCCTGCGA
CACTCAACATGAAGATGGTGAGGCCCTCCTGGTTTGACTTGATGGGGCTGAGTCCAGATGCCCCAGAGGACGAGGCTGGC
ATTAAGAAGGCAGCAGAGACCATCAAGGCCTTGATTGAGCATGAGATGAAGAATGGGATCCCTGCCAATCGGATCGTC

Alignment

ORF - retro_ttru_1522 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.62 %
• Parental protein coverage: 90.6 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TDAATVSGAERETAAVIFLHGLGDTGHSWADALSTIRLPHVKYICPHAPRIPVTLNMKMVMPSWFDLMGL
          .DAATVSGAE.ETAAVIFLHGLGDTGHS.ADALST.RLP.VKY.CP.APR.P.TLNMKMV.PSWFDLMGL
Retrocopy SDAATVSGAEQETAAVIFLHGLGDTGHSCADALSTLRLPYVKYPCPLAPRTPATLNMKMVRPSWFDLMGL

Parental  SPDAPEDEAGIKKAAENIKALIEHEMKNGIPANRIV
          SPDAPEDEAGIKKAAE.IKALIEHEMKNGIPANRIV
Retrocopy SPDAPEDEAGIKKAAETIKALIEHEMKNGIPANRIV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1522 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1522 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000011625	1 retrocopy	retro_btau_1605,
Callithrix jacchus	ENSCJAG00000020914	1 retrocopy	retro_cjac_2585,
Dasypus novemcinctus	ENSDNOG00000011285	2 retrocopies	retro_dnov_1186, retro_dnov_134,
Gorilla gorilla	ENSGGOG00000004330	3 retrocopies	retro_ggor_2114, retro_ggor_2413, retro_ggor_2626,
Macropus eugenii	ENSMEUG00000004768	2 retrocopies	retro_meug_1134, retro_meug_1526,
Microcebus murinus	ENSMICG00000005841	1 retrocopy	retro_mmur_1166,
Otolemur garnettii	ENSOGAG00000032260	1 retrocopy	retro_ogar_2866,
Pongo abelii	ENSPPYG00000001733	1 retrocopy	retro_pabe_142,
Tursiops truncatus	ENSTTRG00000004004	1 retrocopy	retro_ttru_1267,
Tursiops truncatus	ENSTTRG00000011836	3 retrocopies	retro_ttru_1643, retro_ttru_169, retro_ttru_291,
Tursiops truncatus	ENSTTRG00000016127	1 retrocopy	retro_ttru_1522 ,