RetrogeneDB ID: retro_ttru_1895

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_97626:111352..111691(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: YPEL1
• Ensembl ID: ENSTTRG00000016725
• Aliases: None
• Description: yippee-like 1 (Drosophila) [Source:HGNC Symbol;Acc:12845]

Sequence

>retro_ttru_1895
ATGATGAAAATGACAAACTCCATAACTTTCCAAGGTTACCTGCCAAACTGTCCTGAATTTACTGCTATATCCACTGCAAA
GCTCATTTAGCATCATGCTGTGTTGATATCCAAGTCCTTTCGTGTTAGTCAACATCAAGCCCAGCTCTGTAATTCTGGGT
AAATGTGGGCTGTGACCCAGCAGAGGACAGGCCCTCTCCCTGGTGAACATGCTGTAGTGGATATCTATTGTAAAAATTAT
AAAATTTCTCTTGGTTGGAAATATGAACTTGCCTTTGAGAGCAACAGCGATAAGAGATGAAAGTTTATTACTGAACTTGC
TCATGTGTTCAAAGACAAT

Alignment

ORF - retro_ttru_1895 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.62 %
• Parental protein coverage: 97.48 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MVKMTRSKTFQAYLPNCHRTYSCVHCRAHLANHDELISKSFQGSQGRAYLFNSV-VNVGCG-PAEERVL-
          M.KMT.S.TFQ.YLPNC...............H..LISKSF..SQ..A.L.NS..VNVGC..P.....L.
Retrocopy MMKMTNSITFQGYLPNCPE-FTAISTAKLI*HHAVLISKSFRVSQHQAQLCNSG<VNVGCD<PSRGQAL<

Parental  LTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDN
          L.G.HAV.DIYC.N.K..LGWKYE.AFES....K..KFI.ELAH..KDN
Retrocopy LPGEHAVVDIYCKNYKISLGWKYELAFESNSD-KR*KFITELAHVFKDN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1895 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1895 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000001397	1 retrocopy	retro_acar_93,
Callithrix jacchus	ENSCJAG00000015755	1 retrocopy	retro_cjac_597,
Dasypus novemcinctus	ENSDNOG00000024482	1 retrocopy	retro_dnov_13,
Echinops telfairi	ENSETEG00000008187	1 retrocopy	retro_etel_1965,
Pteropus vampyrus	ENSPVAG00000013638	1 retrocopy	retro_pvam_162,
Tursiops truncatus	ENSTTRG00000016725	1 retrocopy	retro_ttru_1895 ,