RetrogeneDB ID:

retro_ttru_657

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_2987:79021..79425(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SKP1
Ensembl ID:ENSTTRG00000016858
Aliases:None
Description:S-phase kinase-associated protein 1 [Source:HGNC Symbol;Acc:10899]


Retrocopy-Parental alignment summary:






>retro_ttru_657
ACCATGTTGGAAGATTTGGGAATGGATGATGAAGGAGATGATGATCCAGTCCCCTTGCCAAATGTTAAGGCAGCAACACT
AAAAAAGGTCATTCAGTGGTGCACCCCCCACAGGGATGGTCCTCCTCTCCTAAGGATGAGGAGAACAAAGAAAAGCGAAC
AGATGACATCCGTGTTTGGGATCAAGAATTCCTGCAAGTTGACCAAGGAACACTTTTTGAGCTTATACTGGCAGCAAACT
ACTTAGACATCAAAGGTTTGCCTGATGTTACCTGCAAGACTGTTGCCAATATGATCAAGGGAGAAACTCCTGAGGAGATT
CGAAAGACATTCAATATCAAAAATGATTTTACTGAAGAAGAGGAAGCCCAGGTACACAGAGAGAACCAGTGGTGTGAGGA
GAAG

ORF - retro_ttru_657 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.97 %
Parental protein coverage: 82.82 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPP-PPEDDENKEKRTDDIPVWDQEFLKVDQ
TMLEDLGMDDEGDDDPVPLPNV.AA.LKKVIQWCT.H.D.PP..P.D.ENKEKRTDDI.VWDQEFL.VDQ
RetrocopyTMLEDLGMDDEGDDDPVPLPNVKAATLKKVIQWCTPHRDGPP<SPKDEENKEKRTDDIRVWDQEFLQVDQ
ParentalGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK
GTLFELILAANYLDIKGL.DVTCKTVANMIKG.TPEEIRKTFNIKNDFTEEEEAQV..ENQWCEEK
RetrocopyGTLFELILAANYLDIKGLPDVTCKTVANMIKGETPEEIRKTFNIKNDFTEEEEAQVHRENQWCEEK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_657 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_657 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 120 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000009945 retrocopies
Callithrix jacchus ENSCJAG000000136131 retrocopy
Cavia porcellus ENSCPOG000000051648 retrocopies
Dipodomys ordii ENSDORG000000029123 retrocopies
Equus caballus ENSECAG000000039312 retrocopies
Echinops telfairi ENSETEG000000075605 retrocopies
Gorilla gorilla ENSGGOG000000229307 retrocopies
Microcebus murinus ENSMICG000000175883 retrocopies
Myotis lucifugus ENSMLUG0000002291913 retrocopies
Macaca mulatta ENSMMUG000000130467 retrocopies
Monodelphis domestica ENSMODG000000141684 retrocopies
Mus musculus ENSMUSG000000363091 retrocopy
Nomascus leucogenys ENSNLEG000000080517 retrocopies
Ochotona princeps ENSOPRG000000066377 retrocopies
Pongo abelii ENSPPYG000000157837 retrocopies
Pteropus vampyrus ENSPVAG000000124274 retrocopies
Sorex araneus ENSSARG000000083074 retrocopies
Tupaia belangeri ENSTBEG0000001554415 retrocopies
Tarsius syrichta ENSTSYG0000001069611 retrocopies
Tursiops truncatus ENSTTRG00000016858 6 retrocopies



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