RetrogeneDB ID: | retro_vpac_621 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_7905:10252..10738(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSVPAG00000011775 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MASGPGGWLGPAFALRLLLATVLQEVSAFRAEFSSESCRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGC |
MASGPGGWLGPAFALRLLLATVLQEVS.FRAEFSSESCRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGC | |
Retrocopy | MASGPGGWLGPAFALRLLLATVLQEVSTFRAEFSSESCRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGC |
Parental | CQEEAQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEE |
CQEEAQFETKKLYAGAILEVCG.KLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEE | |
Retrocopy | CQEEAQFETKKLYAGAILEVCG*KLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEE |
Parental | LSILKWNTDSVEEFLSEKLERI |
LSILKWNT.SVEEFLSEKLERI | |
Retrocopy | LSILKWNTGSVEEFLSEKLERI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000004701 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005462 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000008134 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000003411 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000011775 | 1 retrocopy |
retro_vpac_621 ,
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