Parental gene:

RPA2, ENSBTAG00000006225

Aliases:None
Description:replication protein A 32 kDa subunit [Source:RefSeq peptide;Acc:NP_001039449]
Organism:Cow (Bos taurus)
Coordinates:2:126030986..126055499(+)


>ENSBTAG00000006225
ATGTGGAATAGTGGATTTGAAAGCTATAGCACCTCCTCTTTCGGGGGAGCCGGCGGCTACACACAGTCCCCTGGGGGCTT
TGGATCTCCGACAGCTTCCCAGGCCGAAAAGAAATCCAGAGCTCGAGCTCAGCACATTGTACCCTGTACCATATCTCAGC
TGCTTTCGGCTACTCTGGTTGATGAAGTATTCAGAATTGGAAATGTTGAGATTTCACAGGTCACTATTGTGGGGATTATC
AGAAATGCAGAGAAGGCTGCAACCAACATTGTTTACAAGATAGATGACATGACAGCTGCACCCATGGATGTTCGCCAGTG
GGTTGACACAGATGATGCCAGCAGTGAAAACACTGTGGTCCCTCCAGAAACATATGTGAAAGTGGCTGGTCATCTGAGAT
CTTTCCAGAACAAGAAAAGCCTGGTAGCCTTTAAGATCATTCCCCTGGAGGATATGAATGAGTTTACCACACACATTCTG
GAAGTAGTCAATGCACACATGATGCTGAGCAAGTCGAACAGCCAGCCTTCAGCAGGGAGAGCACCTATCAGCAATCCAGG
AATGGGTGAAGCTGGGAACTTCGGTGGGAATAACTTCATACCAGCAAATGGCCTCACTGTGGCCCAGAACCAGGTGCTGA
ATTTGATCAAGGCTTGCCCAAGACCTGAAGGATTGAACTTTCAGGATCTCAAGAACCAACTCCAACACATGTCCGTAGCC
TCAATCAAGCTAGCTGTGGATTTTCTAAGCAACGAGGGACACATCTATTCCACCGTGGATGATGATCATTTTAAATCCAC
AGACGCAGAATAA

Library Parental gene expression (RPM)
ERP005899_liver 9 .52 RPM
ERP005899_muscle 14 .09 RPM
SRP017611_brain 11 .42 RPM
SRP017611_kidney 15 .11 RPM
SRP017611_liver 6 .27 RPM
SRP030211_testis 51 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009473 ortholog_one2many 1 retrogene
retro_cjac_225,
Homo sapiens ENSG00000117748 ortholog_one2one 2 retrogenes
retro_hsap_704, retro_hsap_815,
Gorilla gorilla ENSGGOG00000015287 ortholog_one2one 2 retrogenes
retro_ggor_599, retro_ggor_668,
Loxodonta africana ENSLAFG00000014387 ortholog_one2one 1 retrogene
retro_lafr_519,
Macaca mulatta ENSMMUG00000018172 ortholog_one2one 2 retrogenes
retro_mmul_1081, retro_mmul_2172,
Nomascus leucogenys ENSNLEG00000009702 ortholog_one2one 3 retrogenes
retro_nleu_1409, retro_nleu_250, retro_nleu_2511,
Oryctolagus cuniculus ENSOCUG00000016194 ortholog_one2many 1 retrogene
retro_ocun_1180,
Otolemur garnettii ENSOGAG00000015583 ortholog_one2one 2 retrogenes
retro_ogar_1838, retro_ogar_2066,
Pongo abelii ENSPPYG00000001651 ortholog_one2one 2 retrogenes
retro_pabe_523, retro_pabe_728,
Pan troglodytes ENSPTRG00000000420 ortholog_one2one 1 retrogene
retro_ptro_566,
Pteropus vampyrus ENSPVAG00000001449 ortholog_one2one 1 retrogene
retro_pvam_166,
Ictidomys tridecemlineatus ENSSTOG00000004433 ortholog_one2one 2 retrogenes
retro_itri_1257, retro_itri_773,
Tarsius syrichta ENSTSYG00000010706 ortholog_one2one 2 retrogenes
retro_tsyr_1184, retro_tsyr_1806,
Tursiops truncatus ENSTTRG00000007507 ortholog_one2one 1 retrogene
retro_ttru_873,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_406 94.07 100.00
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2. retro_btau_633 93.36 93.70
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3. retro_btau_1093 95.56 100.00
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4. retro_btau_1228 94.36 98.52
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5. retro_btau_1359 94.80 99.26
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Download FASTA sequences of all ENSBTAG00000006225 retrocopies