Parental gene:

BT.87402, ENSBTAG00000018382

Aliases:None
Description:Spermine synthase [Source:UniProtKB/Swiss-Prot;Acc:Q3SZA5]
Organism:Cow (Bos taurus)
Coordinates:X:128561585..128591569(-)


>ENSBTAG00000018382
GCTGATGGTGAGACCATTCTGAAAGGCCTCCAGTCCATTTTCCAGGAGCAGGGGATGACGGAGTCAGTGCACACCTGGCA
GGACCATGGCTATTTAGCGACGTACATAAACAAAAACGGCAGCTTTGCCAATTTGAGAATCTACCCACATGGATTGGTGT
TGCTGGATCTTCAGAGCTACGACGGCGATGCACAAGGCAAAGAAGTCGATAGTCTTTTGAACAAAGTAGAAGAAAGAATG
AAAGAATTGAGTCAGGACAGTACTGAGCGGGTAAAGCGATTACCACCCATAGTTCGAGGAGGGGCCATTGACAGATACTG
GCCCACTGCGGATGGTCGCCTGGTTGAGTACGACATAGATAAAGTGGTGTATGACGAAGACTCACCTTACCAGAACATTA
AAATTTTACACTCAAAGCAATTTGGGAATATTCTCATCCTCAGTGGGGATGTTAATTTGGCGGAAAGTGATTTGGCGTAT
ACCCGGGCCATCATGGGCAGTGGCAAAGAAGATTACAGTGGCAAAGATGTACTGATTCTGGGAGGTGGAGACGGGGGCAT
ATTATGTGAAATAGTCAAACTGAAACCAAAGATGGTGACTATGGTAGAGATTGACCAAATGGTGATTGACGGATGTAAGA
AATACATGCGAAAAACGTGTGGTGATGTCTTAGACAATCTTAAAGGAGACTGCTATCAGGTTCTAATAGAAGACTGTATT
CCAGTACTGAAGAGGTACGCCAAAGAAGGGAGAGAGTTTGATTATGTGATTAATGATTTGACAGCTGTTCCAATCTCCAC
ATCTCCGGAAGAAGATTCCACATGGGAGTTTCTCAGACTGATTCTTGATCTCTCAATGAAAGTATTGAAACAGGATGGGA
AATATTTTACACAGGGAAACTGTGTCAATTTGACAGAAGCCCTGTCGCTCTATGAAGAACAGCTGGGGCGCCTGTATTGT
CCTGTGGAATTCTCCAAGGAGATCGTCTGTGTCCCTTCGTACTTGGAATTGTGGGTATTTTACACTGTTTGGAAGAAAGC
TAAACCTTGA

Library Parental gene expression (RPM)
SRP017611_brain 17 .54 RPM
SRP017611_kidney 66 .98 RPM
SRP017611_liver 24 .62 RPM
ERP005899_muscle 74 .59 RPM
ERP005899_liver 39 .80 RPM
SRP030211_testis 3 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013284 ortholog_one2one 3 retrogenes
retro_cfam_1076, retro_cfam_1995, retro_cfam_613,
Callithrix jacchus ENSCJAG00000033933 possible_ortholog 1 retrogene
retro_cjac_518,
Echinops telfairi ENSETEG00000010098 ortholog_one2one 2 retrogenes
retro_etel_1066, retro_etel_1540,
Gorilla gorilla ENSGGOG00000003123 possible_ortholog 3 retrogenes
retro_ggor_1335, retro_ggor_2437, retro_ggor_3009,
Myotis lucifugus ENSMLUG00000013185 possible_ortholog 3 retrogenes
retro_mluc_471, retro_mluc_530, retro_mluc_92,
Macaca mulatta ENSMMUG00000020392 possible_ortholog 2 retrogenes
retro_mmul_2003, retro_mmul_2574,
Monodelphis domestica ENSMODG00000007897 ortholog_one2many 1 retrogene
retro_mdom_412,
Oryctolagus cuniculus ENSOCUG00000006016 possible_ortholog 2 retrogenes
retro_ocun_1458, retro_ocun_1918,
Pongo abelii ENSPPYG00000020182 possible_ortholog 4 retrogenes
retro_pabe_2649, retro_pabe_2810, retro_pabe_3752, retro_pabe_38,
Pteropus vampyrus ENSPVAG00000016785 ortholog_one2one 1 retrogene
retro_pvam_524,
Rattus norvegicus ENSRNOG00000007688 possible_ortholog 2 retrogenes
retro_rnor_1934, retro_rnor_938,
Vicugna pacos ENSVPAG00000007543 ortholog_one2one 1 retrogene
retro_vpac_50,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1412 97.86 67.05
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Download FASTA sequences of all ENSBTAG00000018382 retrocopies