RetrogeneDB ID: | retro_etel_1066 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_206303:9023..9918(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SMS | ||
Ensembl ID: | ENSETEG00000010098 | ||
Aliases: | None | ||
Description: | spermine synthase [Source:HGNC Symbol;Acc:11123] |
Percent Identity: | 86.96 % |
Parental protein coverage: | 85.34 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DGETILKGLQSIFQEQGMTESVHTWQDHGYLATYTNKNGSFANLRIYPHGLVLLDIQSYDSDAQGNKELD |
DGETILKGLQ.IF..QGM.ESVHTW..HG.LATYTN.NGSFA.LRIYPHGLVLLDIQS.D.DAQG.KELD | |
Retrocopy | DGETILKGLQPIFRAQGMSESVHTWPAHGCLATYTNENGSFASLRIYPHGLVLLDIQSSDGDAQGSKELD |
Parental | SLLNKIEERMKELNQESTARVKRLPPIVRGGAIDRYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQ |
SLLNK.EERMKEL.Q....RVKRLPPIVRGGA.DRYWPTADGRLVEYDIDEV.Y.EDSPYQNIKILHSKQ | |
Retrocopy | SLLNKVEERMKELSQPRAPRVKRLPPIVRGGAVDRYWPTADGRLVEYDIDEVLYEEDSPYQNIKILHSKQ |
Parental | FGNILILSGDVNLAESDMAYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVID |
FGN.LILSGDVNLAESD.AYTRAIMG.G.EDY.GKDVLILGGGDGGILCE.VKLKPKMVTMVEIDQMVID | |
Retrocopy | FGNVLILSGDVNLAESDGAYTRAIMGGGNEDYAGKDVLILGGGDGGILCEVVKLKPKMVTMVEIDQMVID |
Parental | GCKKYMRKTCGEVLDNLKGECYQ-LIADCIPVLKRYAKEGRMFDYVINDLTAVPISTSPEEDSTW-EFLR |
.CKK.MRK.CGEVLD.L.G.CY..L.ADCIPVLKRYA.EGRMFDYVINDLTAVPISTSPEEDSTW.EFLR | |
Retrocopy | ACKKFMRKACGEVLDHLQGDCYRVLVADCIPVLKRYAQEGRMFDYVINDLTAVPISTSPEEDSTW>EFLR |
Parental | LILDLSMKVLKQDGKYFTQ |
LILDLSMKVLK.DGKYFTQ | |
Retrocopy | LILDLSMKVLKHDGKYFTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018382 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000013284 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000033933 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006176 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000010098 | 2 retrocopies |
retro_etel_1066 , retro_etel_1540,
|
Homo sapiens | ENSG00000102172 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000003123 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000000192 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000013185 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000020392 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000007897 | 1 retrocopy | |
Mus musculus | ENSMUSG00000071708 | 6 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009955 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006016 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000020182 | 4 retrocopies | |
Pteropus vampyrus | ENSPVAG00000016785 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000007688 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000012109 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000007543 | 1 retrocopy |