RetrogeneDB ID: | retro_cfam_1076 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 22:34098210..34099286(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000013284 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.67 % |
Parental protein coverage: | 97.83 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | TTLPSVSSSPADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFANLRIYPHGLVLLDLQSY |
.TL.......ADGETILKGL.S.FQEQGMTESVHTW.DHGYLATY.NKNG.FANLRIYP.GLVLLDLQS. | |
Retrocopy | STLDFQLGARADGETILKGLRSVFQEQGMTESVHTWPDHGYLATYVNKNGGFANLRIYPRGLVLLDLQSC |
Parental | DGDSQGQEVDSLLNKVEERMKELSQDSTGRVKRLPPIVRGGAIDRYWPTADGRLVEYDIDEVVYDEDSPY |
DGDSQGQEVDSLLNKVEE..KELS.D.TGRVKRLPPIVRGGA.DRYWP.ADGRLVE.D.DEVVYDEDSPY | |
Retrocopy | DGDSQGQEVDSLLNKVEEGLKELSEDGTGRVKRLPPIVRGGAVDRYWPAADGRLVE*DMDEVVYDEDSPY |
Parental | QNIKILHSKQFGNILILSGDVNLAESDLAYTQAIMGSGKEDYSGKDVLILGGGDGGILCEIVKLKP-KMV |
QNIKILHSKQFGNIL.LSGDVNLAESDLA.TQAI.GSGKEDY.GKDVLILGGGDGGILCEIVKLKP.KMV | |
Retrocopy | QNIKILHSKQFGNILVLSGDVNLAESDLASTQAITGSGKEDYGGKDVLILGGGDGGILCEIVKLKP<KMV |
Parental | TMTCLNIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPIST |
TM....IDQMVIDGCKKYMRKT.GDVLD.LKGDCYQVLIEDCIPVL.RYA...REFDYVINDLTAVPIST | |
Retrocopy | TM--VEIDQMVIDGCKKYMRKTWGDVLDDLKGDCYQVLIEDCIPVLGRYAEQRREFDYVINDLTAVPIST |
Parental | SPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLEL |
SPEEDSTWEFLRLILDLSM.VLKQDG.YFTQGNC.NLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLEL | |
Retrocopy | SPEEDSTWEFLRLILDLSMRVLKQDGEYFTQGNCANLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLEL |
Parental | WVFYTVWKKAKP |
WVFYTVWKKAKP | |
Retrocopy | WVFYTVWKKAKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .08 RPM | 51 .78 RPM |
SRP017611_brain | 0 .08 RPM | 41 .28 RPM |
SRP017611_kidney | 0 .86 RPM | 196 .20 RPM |
SRP017611_liver | 0 .07 RPM | 19 .00 RPM |