Parental gene: | C13H20ORF43, ENSBTAG00000027390 |
| Aliases: | RTFDC1, C13H20orf43 |
| Description: | UPF0549 protein C20orf43 homolog [Source:RefSeq peptide;Acc:NP_001069093] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 13:59983722..60027251(-) |
>ENSBTAG00000027390
ATGGGTTGCGACGGAGGAACAATCCCTAAGAGGCATGAACTGGTGAAGGGGCCGAAGAAGGTTGAGAAGGTCGACAAGGA
TGCTGAATTAGTGGCCCAGTGGAACTACTGTACTCTAAGTCAGGAAATATTAAGACGACCAATAGTTGCCTGTGAACTTG
GCAGACTTTACAACAAAGATGCAGTCATTGAATTTTTATTGGACAAATCTTCCGAAAAGGCTCTTGGGAAGGCAGCCTCT
CACATTAAAAGCATTAAGAATGTGACAGAACTGAGGCTCTCTGACAACCCCGCCTGGGAAGGCGATAAAGGAAACACTAA
AGGTGACAAGCATGATGACCTCCAGCGGGCACGTTTCATCTGCCCTGTCGTGGGCTTGGAAATGAACGGCCGACACAGGT
TTTGCTTCCTCCGGTGCTGTGGTTGCGTGTTTTCTGAGCGAGCCCTAAAAGAGATCAAAGCAGAAGTTTGTCACACGTGT
GGGGCTGCCTTCCAGGAGGATGACGTCATCGTGCTCAATGGCACCAAGGAAGACGTGGAAGTACTGAAGAGCAGGATGGA
GGAGAGGCGGCTGCGAGCCAAGCTGGGGAAGAAAACAAAGAAACCTAAGGTGGCAGAGTCTGTCTCAAAATCAGAAGTCA
GTGAAGAAACCCCAGGACCATCAAAAGTGAAAACAGGGAAGCCCGAAGAAACCAGCCTTGACACTCGAGAGAAGAAGACC
AACTCGGCTCCCAAAAGTGCAGCAGCACACGGGATCACTTCTGGAAAAGCCGCTAAGAGGTCCATCGCCGACAGCGAAGA
GTCAGAAGCTTACAAGTCTCTCTTCACCACCCACAGCTCCGCCAAGCGCTCCAAGGAGGAGTCGGCCCACTGGGTCACCC
ACACATCCTACTGCTTCTGA
ATGGGTTGCGACGGAGGAACAATCCCTAAGAGGCATGAACTGGTGAAGGGGCCGAAGAAGGTTGAGAAGGTCGACAAGGA
TGCTGAATTAGTGGCCCAGTGGAACTACTGTACTCTAAGTCAGGAAATATTAAGACGACCAATAGTTGCCTGTGAACTTG
GCAGACTTTACAACAAAGATGCAGTCATTGAATTTTTATTGGACAAATCTTCCGAAAAGGCTCTTGGGAAGGCAGCCTCT
CACATTAAAAGCATTAAGAATGTGACAGAACTGAGGCTCTCTGACAACCCCGCCTGGGAAGGCGATAAAGGAAACACTAA
AGGTGACAAGCATGATGACCTCCAGCGGGCACGTTTCATCTGCCCTGTCGTGGGCTTGGAAATGAACGGCCGACACAGGT
TTTGCTTCCTCCGGTGCTGTGGTTGCGTGTTTTCTGAGCGAGCCCTAAAAGAGATCAAAGCAGAAGTTTGTCACACGTGT
GGGGCTGCCTTCCAGGAGGATGACGTCATCGTGCTCAATGGCACCAAGGAAGACGTGGAAGTACTGAAGAGCAGGATGGA
GGAGAGGCGGCTGCGAGCCAAGCTGGGGAAGAAAACAAAGAAACCTAAGGTGGCAGAGTCTGTCTCAAAATCAGAAGTCA
GTGAAGAAACCCCAGGACCATCAAAAGTGAAAACAGGGAAGCCCGAAGAAACCAGCCTTGACACTCGAGAGAAGAAGACC
AACTCGGCTCCCAAAAGTGCAGCAGCACACGGGATCACTTCTGGAAAAGCCGCTAAGAGGTCCATCGCCGACAGCGAAGA
GTCAGAAGCTTACAAGTCTCTCTTCACCACCCACAGCTCCGCCAAGCGCTCCAAGGAGGAGTCGGCCCACTGGGTCACCC
ACACATCCTACTGCTTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 31 .34 RPM |
| SRP017611_kidney | 29 .99 RPM |
| SRP017611_liver | 9 .59 RPM |
| ERP005899_muscle | 23 .02 RPM |
| ERP005899_liver | 6 .92 RPM |
| SRP030211_testis | 59 .12 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Echinops telfairi | ENSETEG00000003143 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000027502 | ortholog_one2one | 1 retrogene | |
| Ornithorhynchus anatinus | ENSOANG00000009249 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000004444 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_1076 | 76.67 | 59.53 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000027390 retrocopies