Parental gene: | FRG1, ENSCAFG00000007135 |
| Aliases: | None |
| Description: | FSHD region gene 1 [Source:HGNC Symbol;Acc:3954] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 16:41361435..41398601(-) |
>ENSCAFG00000007135
ATGGCCGAATACTCGTACGTGAAGTCCACCAAACTCGTGCTCAAGGGAACCAAGGCCAAGAGTAAGAAGAAAAAGAGCAA
AGAGAAGAAGAGAAAAAGAGAAGAAGATGAAGAAACTCAACTTGATATTGTTGGAATCTGGTGGACAGTCACAAACTTTG
GTGAAATTTCAGGAACCATAGCAATTGAAATGGATAAAGGAACCTATATACATGCACTTGATAATGGACTTTTTACATTG
GGAGCTCCACATAAAGAAGTTGATGAGGGCCCTAGTCCTCCAGAGCAGTTTACAGCTGTCAAATTGTCTGATTCTAGAAT
TGCTCTGAAATCTGGCTATGGAAAATACCTTGGTATTAATTCAGATGGACTTGTTGTGGGGCGGTCAGATGCAATCGGAC
CAAGAGAACAATGGGAACCAGTCTTTCAAGATGGGAAAATGGCTTTATTGGCCTCAAATAGCTGCTTCATTAGATGCAAT
GAAGCAGGTGATATAGAAGCAAAAAGTAAAACAGCAGGAGAAGAAGAAATGATAAAGATTAGATCATGTGCTGAAAGAGA
AACTAAGAAAAAAGATGATATTCCAGAAGAAGACAAAGGAAACGTTAAACAGTGTGAAATCAATTATGTAAAGAAATTTC
AGAGTTTCCAAGACCACAAACTTAAAATAAGTAAAGAAGACAGTAAAATTCTCAAAAAGGCCCGGAAAGATGGATTTTTG
CATGAAACACTTCTGGACAGGAGAGCCAAATTGAAAGCTGATAGATACTGCAAATGA
ATGGCCGAATACTCGTACGTGAAGTCCACCAAACTCGTGCTCAAGGGAACCAAGGCCAAGAGTAAGAAGAAAAAGAGCAA
AGAGAAGAAGAGAAAAAGAGAAGAAGATGAAGAAACTCAACTTGATATTGTTGGAATCTGGTGGACAGTCACAAACTTTG
GTGAAATTTCAGGAACCATAGCAATTGAAATGGATAAAGGAACCTATATACATGCACTTGATAATGGACTTTTTACATTG
GGAGCTCCACATAAAGAAGTTGATGAGGGCCCTAGTCCTCCAGAGCAGTTTACAGCTGTCAAATTGTCTGATTCTAGAAT
TGCTCTGAAATCTGGCTATGGAAAATACCTTGGTATTAATTCAGATGGACTTGTTGTGGGGCGGTCAGATGCAATCGGAC
CAAGAGAACAATGGGAACCAGTCTTTCAAGATGGGAAAATGGCTTTATTGGCCTCAAATAGCTGCTTCATTAGATGCAAT
GAAGCAGGTGATATAGAAGCAAAAAGTAAAACAGCAGGAGAAGAAGAAATGATAAAGATTAGATCATGTGCTGAAAGAGA
AACTAAGAAAAAAGATGATATTCCAGAAGAAGACAAAGGAAACGTTAAACAGTGTGAAATCAATTATGTAAAGAAATTTC
AGAGTTTCCAAGACCACAAACTTAAAATAAGTAAAGAAGACAGTAAAATTCTCAAAAAGGCCCGGAAAGATGGATTTTTG
CATGAAACACTTCTGGACAGGAGAGCCAAATTGAAAGCTGATAGATACTGCAAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 14 .61 RPM |
| SRP017611_kidney | 23 .05 RPM |
| SRP017611_liver | 6 .74 RPM |
| SRP012049_cerebellum | 24 .32 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000013503 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000025737 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000023179 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000009846 | possible_ortholog | 1 retrogene | |
| Sorex araneus | ENSSARG00000002471 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000014491 | possible_ortholog | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000010985 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_718 | 69.37 | 84.88 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000007135 retrocopies