RetrogeneDB ID: | retro_tsyr_1347 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_407427:442..862(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000010985 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.03 % |
Parental protein coverage: | 92.16 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | ISGTIA-EMDRGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGINSDGLV |
ISG.IA.EMD.GTY.HAL.NGLFTLGAPHKEVDEG.SPPEQFTAVKLSDSRIALKSGYGKYL.INSDGL. | |
Retrocopy | ISGPIAIEMDKGTYVHALGNGLFTLGAPHKEVDEGRSPPEQFTAVKLSDSRIALKSGYGKYLSINSDGL- |
Parental | VGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNDAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIP |
VGRSDAIGPR.QWE.VFQDG.M.LLASNSCFIRCN.AGDIEAKSKTA.EE.MIKIR.CAERETKKKDDIP | |
Retrocopy | VGRSDAIGPRAQWE*VFQDGQMILLASNSCFIRCNEAGDIEAKSKTA-EEDMIKIRFCAERETKKKDDIP |
Parental | EE |
E. | |
Retrocopy | EK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013503 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000007135 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000022277 | 7 retrocopies | |
Felis catus | ENSFCAG00000025737 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000023179 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005749 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000016671 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000009846 | 1 retrocopy | |
Sorex araneus | ENSSARG00000002471 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014491 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000010985 | 2 retrocopies |
retro_tsyr_1347 , retro_tsyr_1778,
|