RetrogeneDB ID: | retro_mluc_1490 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429848:4787862..4788624(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FRG1 | ||
Ensembl ID: | ENSMLUG00000023179 | ||
Aliases: | None | ||
Description: | FSHD region gene 1 [Source:HGNC Symbol;Acc:3954] |
Percent Identity: | 64.62 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | MAEYSYVKSTKLVLKGTKAKSKKKKSKEKRKREDDEETQLDIVGIWWTVTNFGEISGTIAIEMDKGT-YI |
MAE.SYV.STK.VL..TK................DEETQLDIV.I.WTVTNFGEISG...IEM.....YI | |
Retrocopy | MAEHSYVRSTKPVLTATKXXXXXXXXXXXXXXXXDEETQLDIVEI*WTVTNFGEISGARTIEMNXXXXYI |
Parental | HALDNGL-FTLGAPHKEVDEGPSPPEQFTAVK-LSDSRIALKSGYGKYLGINSDGLVVGRSDAIGPREQW |
HA..NGL.F.LGAP.KE.DEGP.PP.Q.TAVK.LSDS.IALKSG.G.Y.GINSDGLV.G.S..IG.REQW | |
Retrocopy | HAFGNGL<FALGAPYKEADEGPNPPDQLTAVK>LSDSKIALKSG*GTYFGINSDGLV-GHSHVIGLREQW |
Parental | EPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEIN |
EPVFQD.KM.LLAS.SCFIR.NEA..IEAKSK..GEE.MIKIRS.AERETKKK.DIP.EDKGN.K.CE.. | |
Retrocopy | EPVFQDWKMILLASSSCFIR*NEADHIEAKSKATGEEDMIKIRS*AERETKKKADIP-EDKGNIKWCEL- |
Parental | YVKKFQSFQDQKLKISKEDSKILKKARKDGFLHETLLDRRAKLKADRYCK |
....F.......LK........L.KA.KDG.LHE.LLDRR.KLK.DR.CK | |
Retrocopy | WXXXFRASRTTNLKQARRQ*NSL-KAWKDGVLHEILLDRRVKLKTDRHCK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013503 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000007135 | 1 retrocopy | |
Felis catus | ENSFCAG00000025737 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000023179 | 2 retrocopies |
retro_mluc_1185, retro_mluc_1490 ,
|
Rattus norvegicus | ENSRNOG00000009846 | 1 retrocopy | |
Sorex araneus | ENSSARG00000002471 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014491 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000010985 | 2 retrocopies |