Parental gene:

SNRPA1, ENSCAFG00000010564

Aliases:None
Description:small nuclear ribonucleoprotein polypeptide A' [Source:HGNC Symbol;Acc:11152]
Organism:Dog (Canis familiaris)
Coordinates:3:39778044..39790849(+)


>ENSCAFG00000010564
ATGGTGAAGCTGACGGCGGAGCTGATCGAGCAGGCGGCTCAGTACACCAACGCCGTGCGGGACCGCGAGCTGGATCTCCG
GGGGTATAAAATTCCTGTCATTGAAAATCTGGGTGCTACCTTAGACCAGTTTGATGCTATTGATTTTTCTGACAATGAAA
TCAGGAAACTGGATGGTTTTCCTTTGTTGAGAAGGCTGAAAACATTATTAGTGAACAACAATAGAATATGCCGTATAGGT
GAGGGACTTGATCAGGCTCTACCCTGTCTGACAGAACTCATTCTCACCAACAATAGTCTTGTGGAACTGGGTGACCTAGA
CCCTTTGGCATCTCTCAAATCACTGACTTACCTAAGTATTCTGAGAAATCCTGTAACAAACAAGAAGCATTATAGACTGT
ATGTAATTTATAAAGTTCCGCAAGTCAGAGTACTGGATTTCCAGAAAGTGAAACTAAAAGAGCGTCAGGAAGCAGAGAAA
ATGTTCAAGGGCAAACGGGGTGCACAACTTGCAAAGGATATTGCCAGGAGAAGCAAAACTTTCAATCCAGGTGCTGGTTT
GCCAACTGACAAAAAGAAAGGTGGGCCATCTCCAGGGGATGTAGAAGCAATCAAGAATGCTATAGCAAATGCGTCAACCC
TGGCTGAGGTGGAGCGGCTGAAGGGCTTGCTACAGTCCGGTCAGATACCTGGCAGAGAACGCAGATCAGGCCCCACTGAT
GATGGTGAAGAGGAGATGGAAGAAGACACAGTCACAAATGGGTCCTGA

Library Parental gene expression (RPM)
SRP017611_brain 10 .80 RPM
SRP017611_kidney 22 .12 RPM
SRP017611_liver 13 .05 RPM
SRP012049_cerebellum 21 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007128 ortholog_one2one 1 retrogene
retro_amel_850,
Bos taurus ENSBTAG00000013593 ortholog_one2one 1 retrogene
retro_btau_1453,
Echinops telfairi ENSETEG00000010019 ortholog_one2one 1 retrogene
retro_etel_1366,
Felis catus ENSFCAG00000018594 ortholog_one2one 1 retrogene
retro_fcat_322,
Homo sapiens ENSG00000131876 ortholog_one2one 2 retrogenes
retro_hsap_2148, retro_hsap_2601,
Loxodonta africana ENSLAFG00000012638 ortholog_one2one 1 retrogene
retro_lafr_1230,
Myotis lucifugus ENSMLUG00000014213 ortholog_one2one 1 retrogene
retro_mluc_2442,
Mustela putorius furo ENSMPUG00000010938 ortholog_one2one 1 retrogene
retro_mputfur_1139,
Oryctolagus cuniculus ENSOCUG00000017417 ortholog_one2one 3 retrogenes
retro_ocun_1248, retro_ocun_1775, retro_ocun_366,
Pan troglodytes ENSPTRG00000007513 ortholog_one2one 1 retrogene
retro_ptro_1525,
Tupaia belangeri ENSTBEG00000001669 ortholog_one2one 2 retrogenes
retro_tbel_1772, retro_tbel_3447,
Tarsius syrichta ENSTSYG00000003965 ortholog_one2one 2 retrogenes
retro_tsyr_1229, retro_tsyr_1943,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1208 84.82 73.73
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Download FASTA sequences of all ENSCAFG00000010564 retrocopies