RetrogeneDB ID: | retro_ocun_366 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:56495977..56496664(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000021364 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPA1 | ||
Ensembl ID: | ENSOCUG00000017417 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide A' [Source:HGNC Symbol;Acc:11152] |
Percent Identity: | 72.15 % |
Parental protein coverage: | 90.98 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | LTAELIEQAVQYTHDVLDRDAEHAGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNN |
LTAEL.EQ..QYT....DR......YK.PVIENLGA.LDQFDAIDFSDNEIRKLDGFPLLRRLKTLLV.N | |
Retrocopy | LTAELMEQVAQYTDGLRDRSWAFK-YKAPVIENLGAALDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVSN |
Parental | NRICRIGEGLDQALPCL-TELILTNNSLMELGDLDPLASLRSLTYLSILRNPVTNKKHYR-LYVIYKVPQ |
NR.CRIGEGLDQ.LPCL.TELILT.NSL.EL.DLDP.ASLRSLTYLSILRNPVTNKKHYR..YVIYK... | |
Retrocopy | NRLCRIGEGLDQVLPCL>TELILTHNSLAELRDLDPWASLRSLTYLSILRNPVTNKKHYR<IYVIYKILR |
Parental | VRVLD-FQKVKLKERQEAEKMFKGK-RGAQLAKDIARRSKTFNPGAGLPADKKKGGPSPGDVEAIKNAIA |
VRVLD.F.....K..........G...GAQLAKDI.R.SKT..PGAGL..DKKKGGPSPGDV.AIK.A.A | |
Retrocopy | VRVLD<FPETETKRASGSKENVQGH<HGAQLAKDIGR-SKTCIPGAGLSTDKKKGGPSPGDVKAIKDATA |
Parental | NASTLAEVER-LKGLLQSGQIPGRERR |
NA.TL.EV.R..KG.LQS.Q.PGRE.. | |
Retrocopy | NAWTLDEVGR<VKGGLQSSQMPGRESK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 31 .07 RPM |
SRP017611_kidney | 0 .00 RPM | 24 .43 RPM |
SRP017611_liver | 0 .00 RPM | 13 .57 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007128 | 1 retrocopy | |
Bos taurus | ENSBTAG00000013593 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000010564 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010019 | 1 retrocopy | |
Felis catus | ENSFCAG00000018594 | 1 retrocopy | |
Homo sapiens | ENSG00000131876 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000012638 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014213 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010938 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017417 | 3 retrocopies |
retro_ocun_1248, retro_ocun_1775, retro_ocun_366 ,
|
Pan troglodytes | ENSPTRG00000007513 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001669 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000003965 | 2 retrocopies |