Parental gene: | SNRPA1, ENSOCUG00000017417 |
| Aliases: | None |
| Description: | small nuclear ribonucleoprotein polypeptide A' [Source:HGNC Symbol;Acc:11152] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 17:84703420..84716633(+) |
>ENSOCUG00000017417
ATGGTGAAGCTGACAGCTGAGCTGATCGAGCAAGCGGTGCAGTACACTCACGACGTGCTGGACCGCGACGCTGAACATGC
AGGGTATAAAATTCCTGTCATTGAAAACCTGGGTGCTACCTTGGACCAGTTTGATGCTATCGATTTTTCCGACAATGAGA
TCAGGAAGCTGGATGGGTTTCCTCTGCTGAGAAGACTGAAAACGTTGTTGGTGAACAACAACAGGATATGCCGTATAGGT
GAGGGGCTTGATCAGGCTCTGCCCTGTCTCACAGAACTCATTCTCACCAACAACAGCCTTATGGAACTGGGTGACCTGGA
CCCCTTGGCCTCCCTCAGATCGCTGACGTACCTAAGTATTCTGCGGAATCCTGTAACAAACAAGAAGCATTACAGACTGT
ATGTCATTTACAAAGTTCCACAAGTCAGAGTACTGGATTTCCAGAAAGTAAAGCTAAAAGAGCGTCAGGAAGCAGAGAAA
ATGTTCAAGGGCAAACGGGGTGCACAGCTTGCAAAGGATATTGCCAGGAGAAGCAAAACTTTTAATCCAGGGGCTGGTTT
GCCGGCTGACAAAAAGAAAGGTGGGCCGTCTCCAGGGGATGTCGAGGCAATCAAGAATGCTATAGCCAACGCATCCACCC
TGGCCGAAGTGGAGAGGCTGAAAGGGCTGCTGCAGTCCGGGCAGATCCCTGGCAGAGAACGCAGACCAGGGCCCGCTGAT
GATGCTGAAGAAGAGATGGAGGAAGACACGGTCACAAACGGATCCTGA
ATGGTGAAGCTGACAGCTGAGCTGATCGAGCAAGCGGTGCAGTACACTCACGACGTGCTGGACCGCGACGCTGAACATGC
AGGGTATAAAATTCCTGTCATTGAAAACCTGGGTGCTACCTTGGACCAGTTTGATGCTATCGATTTTTCCGACAATGAGA
TCAGGAAGCTGGATGGGTTTCCTCTGCTGAGAAGACTGAAAACGTTGTTGGTGAACAACAACAGGATATGCCGTATAGGT
GAGGGGCTTGATCAGGCTCTGCCCTGTCTCACAGAACTCATTCTCACCAACAACAGCCTTATGGAACTGGGTGACCTGGA
CCCCTTGGCCTCCCTCAGATCGCTGACGTACCTAAGTATTCTGCGGAATCCTGTAACAAACAAGAAGCATTACAGACTGT
ATGTCATTTACAAAGTTCCACAAGTCAGAGTACTGGATTTCCAGAAAGTAAAGCTAAAAGAGCGTCAGGAAGCAGAGAAA
ATGTTCAAGGGCAAACGGGGTGCACAGCTTGCAAAGGATATTGCCAGGAGAAGCAAAACTTTTAATCCAGGGGCTGGTTT
GCCGGCTGACAAAAAGAAAGGTGGGCCGTCTCCAGGGGATGTCGAGGCAATCAAGAATGCTATAGCCAACGCATCCACCC
TGGCCGAAGTGGAGAGGCTGAAAGGGCTGCTGCAGTCCGGGCAGATCCCTGGCAGAGAACGCAGACCAGGGCCCGCTGAT
GATGCTGAAGAAGAGATGGAGGAAGACACGGTCACAAACGGATCCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 13 .57 RPM |
| SRP017611_kidney | 24 .43 RPM |
| SRP017611_brain | 31 .07 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000007128 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000013593 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000010564 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000010019 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000018594 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000131876 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000012638 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000014213 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000010938 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000007513 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000001669 | ortholog_one2one | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000003965 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_366 | 72.15 | 90.98 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_1248 | 86.77 | 74.12 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_1775 | 74.85 | 65.10 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000017417 retrocopies