Parental gene:

VPS72, ENSCAFG00000012540

Aliases:None
Description:vacuolar protein sorting 72 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:11644]
Organism:Dog (Canis familiaris)
Coordinates:17:60239248..60252810(-)


>ENSCAFG00000012540
ATGAGTTTGGCCGGTGGCCGGGCCCCCCGGAAGACCGCGGGGAACCGGCTTTCTGGGCTCCTGGAAGCCGAGGAGGAAGA
TGAGTTCTACCAGACGACTTACGGGGGTTTCACAGAGGAATCGGGAGATGATGAGTATCAAGGGGACCAGTCAGACACAG
AGGATGAGGTGGACTCTGACTTTGACATTGATGAAGGGGATGAACCATCCAGTGATGGAGAAGCAGAAGAGCCAAGAAGG
AAGCGCCGAGTAGTCACCAAAGCATATAAGGAGCCTCTCAAGAGCTTGAGGCCTCGAAAGGTCAGCACTCCAGCTGGTAG
CTCTCAGAAGGCCCGAGAAGAGAAGGCACTGCTGCCACTAGAACTACAGGACGATGGCTCTGACAGCCGGAAGTCCATGC
GTCAGTCTACAGCCGAGCATACACGACAGACATTCCTTCGGGTACAAGAGAGGCAGGGCCAGTCACGGCGGCGAAAGGGG
CCCCATTGTGAGCGGCCTCTGACCCAGGAAGAGCTGCTCAGAGAGGCCAAGATCACAGAAGAGCTCAACTTACGTTCACT
GGAGACATACGAGAGGCTCGAGGCTGACAAAAAGAAGCAGGTGCACAAGAAGAGGAAGTGCCCTGGGCCCATAATCACCT
ATCATTCGGTGACAGTGCCGCTTGTTGGGGAGCCAGGCCCTAAAGAAGAGAATGTGGATGTGGAAGGGCTGGATCCTACT
CCCACAGCTTCTGCACTGACTCCCCATGCCGGCACTGGACCCGTTGTCCCTCCACCTCGCTGCTCGCGTACTTTCATCAC
TTTTAGTGATGATGCAACATTTGAGGAATGGTTTCCCCAAGGCCGGCCCCCAAAGGTCCCTGTTCGGGAGGTCTGCCCCG
TGACCCATCGCCCAGCCCTGTACCGGGACCCTGTCACAGACATCCCCTACGCCACTGCTCGAGCCTTCAAGATCATCCGT
GAGGCCTACAAGAAGTACATCACTGCCCACGGACTGCCGCCCACTGCCTCAGCCCTGGGCCCTGGCCCACCACCTCCCGA
GCCCCTCCCTGGTTCTGGGCCCCGAGCCTTGCGCCAGAAAATTGTCATCAAAAACCTCTTTCCTGCCCTG

Library Parental gene expression (RPM)
SRP012049_cerebellum 54 .39 RPM
SRP017611_brain 31 .12 RPM
SRP017611_kidney 39 .03 RPM
SRP017611_liver 9 .14 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000824 ortholog_one2many 1 retrogene
retro_amel_1768,
Equus caballus ENSECAG00000017754 ortholog_one2many 1 retrogene
retro_ecab_13,
Echinops telfairi ENSETEG00000004257 ortholog_one2one 1 retrogene
retro_etel_101,
Mustela putorius furo ENSMPUG00000004027 ortholog_one2one 1 retrogene
retro_mputfur_1542,
Mus musculus ENSMUSG00000008958 ortholog_one2one 1 retrogene
retro_mmus_1570,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_807 94.74 55.68
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Download FASTA sequences of all ENSCAFG00000012540 retrocopies