Parental gene: | STIP1, ENSCAFG00000014672 |
| Aliases: | None |
| Description: | stress-induced-phosphoprotein 1 [Source:HGNC Symbol;Acc:11387] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 18:52854686..52865049(-) |
>ENSCAFG00000014672
ATTAAGCAAGTAAATGAGCTGAAAGAGAAGGGCAATAAGGCCCTGAGTGCGGGCAACATTGATGACGCACTGCAGTGCTA
CTCTGAGGCCATTAAGTTAGATCCCCAGAACCATGTGCTCTATAGCAATCGCTCCGCAGCCTACGCCAAGAAAGGGGACT
ACCAGAAGGCTTATGAGGATGGCTGCAAAACCGTGGACTTAAAGCCCGACTGGGGCAAGGGCTATTCGAGGAAGGCTGCA
GCCCTTGAGTTCTTAAACCGATTTGAAGAAGCCAAGCGAACCTACGAAGAGGGTTTAAAACATGAAGCAAATAATCCTCA
GCTCAAAGAGGGCTTACAGAATATGGAGGCTCGGTTGGCAGGAACAGAACGGAAATTCATGAACCCTTTCAACATGCCCA
ATCTGTACCAGAAATTGGAGAGTGATCCCAGGACAAGGACACTGCTCGCTGATCCTACCTACCGGGAGCTGATAGAGCAA
CTACGAAACAAGCCATCTGACTTGGGCACGAAACTGCAAGATCCCCGGATCATGACTACTCTGAGCGTCCTGCTGGGTGT
GGATCTGGGCAGTATGGATGAGGAGGAGGAAGTTGGAACACCTCCCCCACCTCCTCCTCCCAAGAAGGACACCAAGCCAG
AGCCAATGGAAGAAGATCTTCCAGAGAATAAGAAGCAGGCGCTGAAAGAGAAAGAGCTGGGGAACGAAGCCTACAAGAAG
AAAGACTTTGACACAGCCTTGAAGCACTATGACCGAGCCAAGGACCTGGACCCCACCAACATGACTTACATGACTAATCA
AGCAGCCGTGTACTTCGAGAAGGGTGACTACAGTAAATGCCGGGAGCTTTGTGAGAAGGCCATCGAAGTGGGGCGAGAAA
ACCGAGAAGACTATCGACAGATTGCCAAAGCTTATGCTCGAATTGGCAACTCCTACTTCAAGGAAGAAAAGTACAAGGAT
GCCATCCATTTCTATAACAAGTCTTTGGCAGAGCACCGGACCCCAGATGTGCTCAAGAAATGCCAACAGGCAGAGAAAAT
TCTGAAGGAGCAAGAGCGGCTGGCTTACATAAACCCAGATCTGGCCTTGGAGGAGAAGAACAAAGGCAATGAATGTTTTC
AGAAAGGGGACTATCCCCAGGCCATGAAGCATTATACAGAAGCCATCAAACGGAATCCAAAAGATGCCAAATTGTACAGC
AATCGAGCTGCCTGCTACACCAAACTCCTGGAGTTTCAGCTGGCGCTCAAGGACTGTGAGGAATGTATCCAGCTAGAGCC
AGCCTTCATCAAGGGGTACACCCGGAAAGCAGCTGCCCTGGAGGCAATGAAGGACTACACGAAAGCCATGGATGTCTACC
AGAAGGCGTTAGATCTGGACTCCAACTGTAAGGAAGCGGCAGACGGTTACCAGCGCTGTATGATGGCCCAGTACAACCGC
CACGATAGCCCCGAAGATGTGAAGCGACGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCTGCCATGCG
GCTTATCCTGGAGCAGATGCAGAAGGACCCTCAGGCACTCAGCGAACACTTAAAGAATCCTGTAATAGCACAGAAGATCC
AGAAGCTGATGGATGTGGGTCTGATTGCAATTCGGTGA
ATTAAGCAAGTAAATGAGCTGAAAGAGAAGGGCAATAAGGCCCTGAGTGCGGGCAACATTGATGACGCACTGCAGTGCTA
CTCTGAGGCCATTAAGTTAGATCCCCAGAACCATGTGCTCTATAGCAATCGCTCCGCAGCCTACGCCAAGAAAGGGGACT
ACCAGAAGGCTTATGAGGATGGCTGCAAAACCGTGGACTTAAAGCCCGACTGGGGCAAGGGCTATTCGAGGAAGGCTGCA
GCCCTTGAGTTCTTAAACCGATTTGAAGAAGCCAAGCGAACCTACGAAGAGGGTTTAAAACATGAAGCAAATAATCCTCA
GCTCAAAGAGGGCTTACAGAATATGGAGGCTCGGTTGGCAGGAACAGAACGGAAATTCATGAACCCTTTCAACATGCCCA
ATCTGTACCAGAAATTGGAGAGTGATCCCAGGACAAGGACACTGCTCGCTGATCCTACCTACCGGGAGCTGATAGAGCAA
CTACGAAACAAGCCATCTGACTTGGGCACGAAACTGCAAGATCCCCGGATCATGACTACTCTGAGCGTCCTGCTGGGTGT
GGATCTGGGCAGTATGGATGAGGAGGAGGAAGTTGGAACACCTCCCCCACCTCCTCCTCCCAAGAAGGACACCAAGCCAG
AGCCAATGGAAGAAGATCTTCCAGAGAATAAGAAGCAGGCGCTGAAAGAGAAAGAGCTGGGGAACGAAGCCTACAAGAAG
AAAGACTTTGACACAGCCTTGAAGCACTATGACCGAGCCAAGGACCTGGACCCCACCAACATGACTTACATGACTAATCA
AGCAGCCGTGTACTTCGAGAAGGGTGACTACAGTAAATGCCGGGAGCTTTGTGAGAAGGCCATCGAAGTGGGGCGAGAAA
ACCGAGAAGACTATCGACAGATTGCCAAAGCTTATGCTCGAATTGGCAACTCCTACTTCAAGGAAGAAAAGTACAAGGAT
GCCATCCATTTCTATAACAAGTCTTTGGCAGAGCACCGGACCCCAGATGTGCTCAAGAAATGCCAACAGGCAGAGAAAAT
TCTGAAGGAGCAAGAGCGGCTGGCTTACATAAACCCAGATCTGGCCTTGGAGGAGAAGAACAAAGGCAATGAATGTTTTC
AGAAAGGGGACTATCCCCAGGCCATGAAGCATTATACAGAAGCCATCAAACGGAATCCAAAAGATGCCAAATTGTACAGC
AATCGAGCTGCCTGCTACACCAAACTCCTGGAGTTTCAGCTGGCGCTCAAGGACTGTGAGGAATGTATCCAGCTAGAGCC
AGCCTTCATCAAGGGGTACACCCGGAAAGCAGCTGCCCTGGAGGCAATGAAGGACTACACGAAAGCCATGGATGTCTACC
AGAAGGCGTTAGATCTGGACTCCAACTGTAAGGAAGCGGCAGACGGTTACCAGCGCTGTATGATGGCCCAGTACAACCGC
CACGATAGCCCCGAAGATGTGAAGCGACGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCTGCCATGCG
GCTTATCCTGGAGCAGATGCAGAAGGACCCTCAGGCACTCAGCGAACACTTAAAGAATCCTGTAATAGCACAGAAGATCC
AGAAGCTGATGGATGTGGGTCTGATTGCAATTCGGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 99 .08 RPM |
| SRP017611_kidney | 53 .82 RPM |
| SRP017611_liver | 29 .88 RPM |
| SRP012049_cerebellum | 101 .39 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000015663 | ortholog_one2many | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000018209 | ortholog_one2one | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000002914 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000005937 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000168439 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000012132 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000016933 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000012953 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000004777 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000003820 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000021164 | ortholog_one2one | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000014262 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000010235 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_474 | 96.34 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_497 | 86.08 | 71.93 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_1077 | 78.12 | 83.12 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_1172 | 93.48 | 67.34 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_1722 | 89.83 | 64.22 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cfam_1982 | 90.68 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000014672 retrocopies