Parental gene:

STIP1, ENSCPOG00000002914

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_42:5158655..5165699(+)


>ENSCPOG00000002914
CAGGTGAATGAGCTAAAGGAGAAGGGCAATAAGGCCCTGAGCGCTGGTAATATTGATGACGCCTTACAGTGCTACTCTGA
AGCAATTAAGCTGGACCCCCACAACCATGTGCTCTATAGTAACCGCTCTGCGGCCTATGCCAAGAAAGGAGACTACCAGA
AGGCTTATGAGGACGGCTGCAAAACTGTTGACCTGAAACCCGACTGGGGCAAGGGTTATTCAAGAAAAGCAGCAGCTCTG
GAGTTCTTAAACAGATATGAAGAAGCCAAGCGAACCTACGAGGAGGGCTTAACACATGAAGCGAGTAATCCTCAACTCAA
AGAGGGCTTACAGAATATGGAGGCCCGGTTGGCAGAGAGGAAATTCATGAACCCTTTCAACATGCCCAACCTGTATCAGA
AGCTAGAGAATGATCCCAGGACAAGGACGCTGCTTAGTGACCCTACCTACTGGGAGCTGATTGAGCAACTACGAAACAAG
CCGTCCGACCTGGGCACGAAACTACAGGACCCTCGGATCATGACCACACTCAGTGTCCTGCTCGGGGTTGATCTGGGCAG
CATGGATGAGGAGGAGGAGGCTGCAACTCCTCCTCCTCCGCCTCCTCCCAAAAAGGAGACCAAGCCAGAGCCAATGGAAG
AGGATCTTCCAGAGAATAAGAAGCAGGCACTGAAAGAAAAAGAGCTGGGGAACGATGCCTACAAGAAGAAAGATTTTGAC
ACAGCACTGAAGCATTACGACAGAGCCAAGGAGCTGGACCCCACCAACATGACTTACATTACTAATCAAGCAGCGGTATA
CTTTGAAAAGGGCGACTATAATAAATGCCGGGAGCTTTGTGAGAAGGCCATCGAAGTGGGGCGAGAAAACCGGGAAGACT
ATCGACAGATCGCCAAAGCTTATGCTCGAATTGGCAATTCTTACTTCAAAGAGGAAAAGTACAAGGATGCCATCCATTTC
TACAACAAGTCTTTGGCAGAGCATCGAACCCCAGATGTATTGAAGAAATGCCAGCAGGCAGAGAAAATCCTGAAGGAGCA
AGAGCGGCTGGCCTACATCAACCCTGACTTGGCTTTGGAGGAAAAGAACAAGGGCAATGAGTGCTTCCAGAAAGGAGATT
ATCCCCAGGCCATGAAGCACTACACAGAAGCCATTAAACGGAATCCCCGAGACGCCAAGCTGTACAGCAATCGAGCTGCT
TGCTACACCAAGCTCCTGGAGTTCCAGCTGGCGCTGAAGGACTGTGAAGAATGCATCCAGCTGGAGCCGACCTTCATCAA
GGGTTACACCCGGAAAGCAGCTGCGCTGGAGGCCATGAAGGACTACACAAAGGCCATGGATGTATACCAGAAGGCACTGG
ACCTGGACTCCAGCTGCAAGGAGGCTGCAGATGGGTACCAGCGCTGTGTGATGGCTCAGTACAACAGACACGACAACCCT
GAGGATGTAAAACGACGGGCCATGGCAGACCCCGAGGTGCAGCAGATAATGAGTGACCCGGCCATGCGGCTCATCCTGGA
GCAGATGCAGAAGGACCCCCAGGCGCTCAGCGAACACTTGAAGAACCCTGTAATAGCGCAGAAGATCCAGAAGCTGATGG
ACGTGGGCCTGATCGCAATTCGG

Library Parental gene expression (RPM)
SRP017611_brain 111 .12 RPM
SRP017611_kidney 101 .76 RPM
SRP017611_liver 60 .68 RPM
SRP040447_lung 94 .02 RPM
SRP040447_skeletal_muscle 105 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000015663 ortholog_one2many 2 retrogenes
retro_btau_836, retro_btau_913,
Canis familiaris ENSCAFG00000014672 ortholog_one2one 6 retrogenes
retro_cfam_1077, retro_cfam_1172, retro_cfam_1722, retro_cfam_1982, retro_cfam_474, retro_cfam_497,
Callithrix jacchus ENSCJAG00000018209 ortholog_one2one 2 retrogenes
retro_cjac_1043, retro_cjac_2222,
Felis catus ENSFCAG00000005937 ortholog_one2one 1 retrogene
retro_fcat_1510,
Homo sapiens ENSG00000168439 ortholog_one2one 1 retrogene
retro_hsap_4867,
Gorilla gorilla ENSGGOG00000012132 ortholog_one2one 1 retrogene
retro_ggor_3040,
Microcebus murinus ENSMICG00000016933 ortholog_one2one 1 retrogene
retro_mmur_1045,
Macaca mulatta ENSMMUG00000012953 ortholog_one2one 1 retrogene
retro_mmul_2607,
Nomascus leucogenys ENSNLEG00000004777 ortholog_one2one 1 retrogene
retro_nleu_2000,
Pan troglodytes ENSPTRG00000003820 ortholog_one2one 1 retrogene
retro_ptro_3242,
Rattus norvegicus ENSRNOG00000021164 ortholog_one2one 2 retrogenes
retro_rnor_2862, retro_rnor_468,
Ictidomys tridecemlineatus ENSSTOG00000014262 ortholog_one2one 1 retrogene
retro_itri_1578,
Tursiops truncatus ENSTTRG00000010235 ortholog_one2one 1 retrogene
retro_ttru_1900,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1443 77.33 54.53
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Download FASTA sequences of all ENSCPOG00000002914 retrocopies