RetrogeneDB ID: | retro_cfam_2107 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:84801147..84801636(+) | ||
Located in intron of: | ENSCAFG00000018196 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPM4 | ||
Ensembl ID: | ENSCAFG00000015796 | ||
Aliases: | None | ||
Description: | tropomyosin 4 [Source:HGNC Symbol;Acc:12013] |
Percent Identity: | 76.47 % |
Parental protein coverage: | 59.86 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | EAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAE |
E.E........G......RAMKD.EKMEIQEMQLKEAKHIAEEADRK.E.VA.KLVILE..LER.EE.AE | |
Retrocopy | EQERNEGDRKLGHXXXXXRAMKD-EKMEIQEMQLKEAKHIAEEADRK*EAVAYKLVILED*LERVEEHAE |
Parental | VSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTID |
VSELKC..LEEELKNVT.NLKSL.AASE..SEK.DK..EEIKLLSDKLKEAET.AEFAER.VAKLEKTI. | |
Retrocopy | VSELKCSNLEEELKNVTDNLKSLDAASE-VSEKDDK-*EEIKLLSDKLKEAETCAEFAERMVAKLEKTIG |
Parental | DLEEKLAQAKEENVGLHQTLDQTLNELNCI |
DLEEKLAQAKEEN.GLHQTL....NELNCI | |
Retrocopy | DLEEKLAQAKEENMGLHQTL----NELNCI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 52 .79 RPM |
SRP017611_brain | 0 .00 RPM | 36 .52 RPM |
SRP017611_kidney | 0 .00 RPM | 37 .38 RPM |
SRP017611_liver | 0 .00 RPM | 14 .87 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004553 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000015796 | 1 retrocopy |
retro_cfam_2107 ,
|
Canis familiaris | ENSCAFG00000016966 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000017311 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000014135 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014510 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000014882 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031799 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005413 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000010637 | 10 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009755 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024252 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012927 | 7 retrocopies | |
Tarsius syrichta | ENSTSYG00000010642 | 9 retrocopies | |
Tursiops truncatus | ENSTTRG00000014542 | 2 retrocopies |