Parental gene: | NARS, ENSCJAG00000003837 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 13:95524402..95544812(-) |
>ENSCJAG00000003837
ATGGTGCTAGCAGAACTGTATGTCTCTGAACGAGAGGGCGATGATGCCACGGGAGATGGAACCAAGGAGAAGCCATTTAA
AACCGGTCTAAAGGCTTTGATGACAGTAGGAAAAGAACCATTTCCTACCATTTACGTGGATTCACAAAAAGAAAATGAGA
GGTGGAATGTTATTTCTAAATCACAGATGAAGAACATTAAAAAGATGTGGCATAGGGAACAAATGAAGAGTGACTCCCGG
GATAAGAAAGAGGCAGAAGATAATTTACGAAGAGAAAAGAACCTGGAAGAAGCCAAGAAGATTACCATTAAAAACGATCC
AAGTCTCCCAGAGCCAAAATGTGTGAAGATTAGTGCGTTAGAGGGATATCGAGGCCAAAGAGTAAAGGTGTTTGGCTGGG
TCCACAGGCTACGTAGGCAAGGAAAGAATTTAATGTTTCTGGTGTTGCGAGATGGGACAGGTTTTCTTCAGTGTGTCTTG
GCGGATGAGTTGTGTCTGTGCTACAATGGACTACTCTTGTCCACGGAGAGTAGCGTGGCAGTGTATGGAACGCTAAATCT
TACCCCAAAGGGCAAGCAGGCTCCAGGTGGCCATGAGCTGAGTTGTGACTTCTGGGAACTCATTGGCTTGGCCCCTGCTG
GAGGAGCTGACAACTTGATCAACGAGGAGTCTGATGTTGACGTCCAGCTCAACAACAGACACATGATGATCCGAGGAGAA
AACATGTCCAAAATCTTCAGAGCACGCTCCATGATCACCAGGTGCTTTAGAGATCACTTCTTTGATAGGGGGTACTGTGA
AGTAACTCCTCCAACATTAGTGCAAACACAAGTAGAAGGTGGCTCCACGCTCTTCAAGCTTGACTACTTTGGGGAAGAGG
CATTTTTGACTCAGTCCTCTCAGTTGTACCTGGAGACTTGCCTCCCAGCCCTGGGAGATGTTTTTTGCATCGCACAGTCA
TACCGGGCAGAACAGTCCAGAACACGAAGGCACCTGGCTGAGTACACTCACGTGGAAGCCGAGTGTCCTTTCCTGAGCTT
TGAGGACCTCCTGAACCGGCTGGAGGACTTGGTCTGTGATGTGGTAGACCGAGTACTGAAGTCACCTGTAGCCAGCATAG
TGCATGAACTCAACCCGAACTTTAAGCCCCCCAAACGGCCTTTCAAACGGATGAACTATTCAGATGCTATCGTGTGGCTA
AAAGAACACGATATAAAGAAAGAAGATGGAACTTTCTATGAATTTGGAGAAGATATCCCAGAAGCTCCTGAGAGACTGAT
GACAGACACCATTAATGAACCAATCTTGCTGTGTCGATTTCCTGTGGAGATCAAGTCCTTCTACATGCAGCGATGTCCTG
AGGATCCCCGTCTTACTGAATCTGTCGACGTGTTGATGCCCAATGTTGGTGAGATTGTGGGAGGCTCAATGCGTATCTGG
GATAATGAAGAAATACTGGCAGGGTATAAAAGGGAAGGGATCGACCCCACTCCCTATTACTGGTATACAGATCAGAGAAA
ATACGGCACATGTCCACATGGAGGCTATGGCTTGGGCCTGGAACGATTTTTAACATGGATTCTGAATAGGTATCACATCC
GAGACGTGTGCTTATACCCTCGATTTGTCCAGCGCTGCAAGCCATAA
ATGGTGCTAGCAGAACTGTATGTCTCTGAACGAGAGGGCGATGATGCCACGGGAGATGGAACCAAGGAGAAGCCATTTAA
AACCGGTCTAAAGGCTTTGATGACAGTAGGAAAAGAACCATTTCCTACCATTTACGTGGATTCACAAAAAGAAAATGAGA
GGTGGAATGTTATTTCTAAATCACAGATGAAGAACATTAAAAAGATGTGGCATAGGGAACAAATGAAGAGTGACTCCCGG
GATAAGAAAGAGGCAGAAGATAATTTACGAAGAGAAAAGAACCTGGAAGAAGCCAAGAAGATTACCATTAAAAACGATCC
AAGTCTCCCAGAGCCAAAATGTGTGAAGATTAGTGCGTTAGAGGGATATCGAGGCCAAAGAGTAAAGGTGTTTGGCTGGG
TCCACAGGCTACGTAGGCAAGGAAAGAATTTAATGTTTCTGGTGTTGCGAGATGGGACAGGTTTTCTTCAGTGTGTCTTG
GCGGATGAGTTGTGTCTGTGCTACAATGGACTACTCTTGTCCACGGAGAGTAGCGTGGCAGTGTATGGAACGCTAAATCT
TACCCCAAAGGGCAAGCAGGCTCCAGGTGGCCATGAGCTGAGTTGTGACTTCTGGGAACTCATTGGCTTGGCCCCTGCTG
GAGGAGCTGACAACTTGATCAACGAGGAGTCTGATGTTGACGTCCAGCTCAACAACAGACACATGATGATCCGAGGAGAA
AACATGTCCAAAATCTTCAGAGCACGCTCCATGATCACCAGGTGCTTTAGAGATCACTTCTTTGATAGGGGGTACTGTGA
AGTAACTCCTCCAACATTAGTGCAAACACAAGTAGAAGGTGGCTCCACGCTCTTCAAGCTTGACTACTTTGGGGAAGAGG
CATTTTTGACTCAGTCCTCTCAGTTGTACCTGGAGACTTGCCTCCCAGCCCTGGGAGATGTTTTTTGCATCGCACAGTCA
TACCGGGCAGAACAGTCCAGAACACGAAGGCACCTGGCTGAGTACACTCACGTGGAAGCCGAGTGTCCTTTCCTGAGCTT
TGAGGACCTCCTGAACCGGCTGGAGGACTTGGTCTGTGATGTGGTAGACCGAGTACTGAAGTCACCTGTAGCCAGCATAG
TGCATGAACTCAACCCGAACTTTAAGCCCCCCAAACGGCCTTTCAAACGGATGAACTATTCAGATGCTATCGTGTGGCTA
AAAGAACACGATATAAAGAAAGAAGATGGAACTTTCTATGAATTTGGAGAAGATATCCCAGAAGCTCCTGAGAGACTGAT
GACAGACACCATTAATGAACCAATCTTGCTGTGTCGATTTCCTGTGGAGATCAAGTCCTTCTACATGCAGCGATGTCCTG
AGGATCCCCGTCTTACTGAATCTGTCGACGTGTTGATGCCCAATGTTGGTGAGATTGTGGGAGGCTCAATGCGTATCTGG
GATAATGAAGAAATACTGGCAGGGTATAAAAGGGAAGGGATCGACCCCACTCCCTATTACTGGTATACAGATCAGAGAAA
ATACGGCACATGTCCACATGGAGGCTATGGCTTGGGCCTGGAACGATTTTTAACATGGATTCTGAATAGGTATCACATCC
GAGACGTGTGCTTATACCCTCGATTTGTCCAGCGCTGCAAGCCATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 42 .69 RPM |
| SRP051959_skeletal_muscle | 38 .09 RPM |
| SRP051959_lymph_node | 35 .36 RPM |
| SRP051959_lung | 38 .15 RPM |
| SRP051959_liver | 53 .78 RPM |
| SRP051959_kidney | 85 .28 RPM |
| SRP051959_heart | 33 .91 RPM |
| SRP051959_colon | 41 .78 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000013227 | ortholog_one2one | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000000559 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000000774 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000016302 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000002118 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2194 | 95.63 | 99.82 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3091 | 89.10 | 84.12 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000003837 retrocopies