Parental gene: | NARS, ENSCPOG00000013227 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_14:7885628..7901229(+) |
>ENSCPOG00000013227
TATAAAACAGCAGAGCTGTATGTGTCGGATCGAGAGGGAGATGATGCCACAGGAGATGGAACCAAGGAGAAACCATTTAA
AACAGGTCTAAAGGCTTTGATGACAGTAGGAAAAGAACCATTTCCTACCATTTACGTAGATTCACAAAAAGAAAATGAGA
GGTGGGACGTTATTTCTAAATCACAAATGAAGAACATTAAAAAACTGTGGCATAGGGAACAAATGAAGACTGAATCCCAG
GAGAAGAGAGAGGCAGAAGATAGTTTGCGAAGAGAAAAGAACCTGGAAGAAGCCAAGAAGATATCCATCAAAAAGGATCC
AAGTCTGCCAGAGCCAAAGTGTGTGAAGATTGGTGCATTAGAAGGCTATAGAGGCCAAAGAGTAAAGGTGTTTGGCTGGG
TCCATAGGCTTCGTAGACAAGGAAAGAATTTAATGTTCCTGGTGTTGCGAGATGGTACAGGTTATCTTCAGTGTGTCTTA
TCAGATGATTTGTGTCTGTGTTACAATGGAGTAGTCTTGTCCACTGAGAGTAGTGTTGCAGTTTATGGAACTCTGAATCT
TATCCCAAAGGGCAAGCAGGCTCCGGGGGGCCATGAACTGAGCTGTGACTTCTGGGAGCTCATAGGCTTGGCCCCTGCTG
GAGGAGCTGATAACCTGATCAACGAGGAGTCTGACGTTGACGTCCAGCTCAACAACAGGCACATGATGATCCGGGGAGAA
AACATGTCCAAAATCCTGAGAGCACGTTCTATGATCACCGCCTGCTTCCGAGAGCACTTCTTTGACAGAGGCTACTACGA
AGTGACCCCTCCAACACTGGTGCAGACGCAGGTGGAAGGTGGCTCCACACTCTTCAAGCTGGACTACTTTGGGGAAGAGG
CATTTCTGACTCAGTCCTCTCAGTTGTACCTGGAGACCTGCCTTCCCTCGCTGGGAGACGTGTTTTGTATTGCGCAGTCA
TACAGGGCAGAACAATCCAGAACACGAAGGCACCTGGCTGAGTACACTCACGTGGAAGCAGAGTGCCCTTTCCTGAGCTT
TGAGGACCTCCTGAACCGATTGGAAGACTTGGTTTGTGATGTCGTAGATAGAGTCTTAAAGTCGCCAGCAGGAAGCATAG
TGTCTGACCTCAATCCGAACTTCAAGCCCCCCAAACGGCCTTTCAAAAGGATGAACTACACAGATGCTATCGCGTGGCTG
AAAGAACACAATGTAAAGAAAGAAGATGGGACTTTCTATGAGTTTGGAGAGGATATCCCGGAAGCTCCTGAGAGACTGAT
GACAGACACCATTAATGAACCAATCTTGCTGTGTCGATTTCCTGTGGAGATCAAGTCCTTCTATATGCAGCGATGTCCTG
AGGACCCCCGTCTTACTGAATCAGTGGACGTGTTGATGCCCAATGTTGGTGAGATCGTGGGAGGCTCCATGCGTATCTGG
GACAGTGAAGAAATCCTGGCAGGTTATAAAAGAGAAGGCATTGATCCCACTCCTTACTACTGGTACACAGATCAGAGAAA
ATACGGTACATGCCCTCACGGAGGATATGGCCTGGGCTTGGAACGATTCCTGACGTGGCTCCTGAACAGATATCACATCC
GAGATGTGTGCTTGTACCCTCGGTTTGTCCAGCGCTGCAAGCCATAG
TATAAAACAGCAGAGCTGTATGTGTCGGATCGAGAGGGAGATGATGCCACAGGAGATGGAACCAAGGAGAAACCATTTAA
AACAGGTCTAAAGGCTTTGATGACAGTAGGAAAAGAACCATTTCCTACCATTTACGTAGATTCACAAAAAGAAAATGAGA
GGTGGGACGTTATTTCTAAATCACAAATGAAGAACATTAAAAAACTGTGGCATAGGGAACAAATGAAGACTGAATCCCAG
GAGAAGAGAGAGGCAGAAGATAGTTTGCGAAGAGAAAAGAACCTGGAAGAAGCCAAGAAGATATCCATCAAAAAGGATCC
AAGTCTGCCAGAGCCAAAGTGTGTGAAGATTGGTGCATTAGAAGGCTATAGAGGCCAAAGAGTAAAGGTGTTTGGCTGGG
TCCATAGGCTTCGTAGACAAGGAAAGAATTTAATGTTCCTGGTGTTGCGAGATGGTACAGGTTATCTTCAGTGTGTCTTA
TCAGATGATTTGTGTCTGTGTTACAATGGAGTAGTCTTGTCCACTGAGAGTAGTGTTGCAGTTTATGGAACTCTGAATCT
TATCCCAAAGGGCAAGCAGGCTCCGGGGGGCCATGAACTGAGCTGTGACTTCTGGGAGCTCATAGGCTTGGCCCCTGCTG
GAGGAGCTGATAACCTGATCAACGAGGAGTCTGACGTTGACGTCCAGCTCAACAACAGGCACATGATGATCCGGGGAGAA
AACATGTCCAAAATCCTGAGAGCACGTTCTATGATCACCGCCTGCTTCCGAGAGCACTTCTTTGACAGAGGCTACTACGA
AGTGACCCCTCCAACACTGGTGCAGACGCAGGTGGAAGGTGGCTCCACACTCTTCAAGCTGGACTACTTTGGGGAAGAGG
CATTTCTGACTCAGTCCTCTCAGTTGTACCTGGAGACCTGCCTTCCCTCGCTGGGAGACGTGTTTTGTATTGCGCAGTCA
TACAGGGCAGAACAATCCAGAACACGAAGGCACCTGGCTGAGTACACTCACGTGGAAGCAGAGTGCCCTTTCCTGAGCTT
TGAGGACCTCCTGAACCGATTGGAAGACTTGGTTTGTGATGTCGTAGATAGAGTCTTAAAGTCGCCAGCAGGAAGCATAG
TGTCTGACCTCAATCCGAACTTCAAGCCCCCCAAACGGCCTTTCAAAAGGATGAACTACACAGATGCTATCGCGTGGCTG
AAAGAACACAATGTAAAGAAAGAAGATGGGACTTTCTATGAGTTTGGAGAGGATATCCCGGAAGCTCCTGAGAGACTGAT
GACAGACACCATTAATGAACCAATCTTGCTGTGTCGATTTCCTGTGGAGATCAAGTCCTTCTATATGCAGCGATGTCCTG
AGGACCCCCGTCTTACTGAATCAGTGGACGTGTTGATGCCCAATGTTGGTGAGATCGTGGGAGGCTCCATGCGTATCTGG
GACAGTGAAGAAATCCTGGCAGGTTATAAAAGAGAAGGCATTGATCCCACTCCTTACTACTGGTACACAGATCAGAGAAA
ATACGGTACATGCCCTCACGGAGGATATGGCCTGGGCTTGGAACGATTCCTGACGTGGCTCCTGAACAGATATCACATCC
GAGATGTGTGCTTGTACCCTCGGTTTGTCCAGCGCTGCAAGCCATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 58 .06 RPM |
| SRP017611_kidney | 93 .07 RPM |
| SRP017611_brain | 119 .06 RPM |
| SRP040447_lung | 256 .90 RPM |
| SRP040447_skeletal_muscle | 43 .61 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000003837 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000000559 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000000774 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000016302 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000002118 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_429 | 92.11 | 57.30 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_736 | 97.62 | 99.45 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cpor_1441 | 95.41 | 95.26 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000013227 retrocopies