Parental gene:

TPM2, ENSCJAG00000009627

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:137452750..137461101(-)


>ENSCJAG00000009627
ATGGACGCCATCAAGAAGAAGATGCAGATGCTGAAGCTGGACAAGGAGAACGCCATCGACCGCGCCGAGCAGGCCGAAGC
CGACAAGAAGCAAGCTGAGGATCGCTGCAAGCAGCTGGAGGAGGAGCAGCAGGCCCTCCAGAAGAAGCTGAAGGGGACAG
AGGATGAAGTGGAAAAGTATTCTGAATCCGTGAAGGAGGCCCAGGAGAAACTGGAGCAGGCCGAGAAGAAGGCCACCGAT
GCTGAGGCAGATGTGGCCTCCCTGAACCGCCGCATTCAGCTGGTAGAGGAGGAGCTGGACCGGGCCCAGGAGCGCCTGGC
TACAGCCCTGCAGAAGCTGGAGGAGGCTGAGAAGGCAGCTGATGAGAGCGAGAGAGGAATGAAGGTCATCGAAAACCGGG
CCATGAAGGATGAGGAGAAGATGGAGCTGCAGGAGATGCAGCTGAAAGAGGCCAAGCACATCGCTGAGGATTCAGACCGC
AAATACGAGGAGGTGGCCAGAAAGCTGGTGATCCTGGAAGGAGAGCTGGAGCGCTCAGAAGAGAGAGCTGAGGTGGCCGA
GAGTAAATGTGGGGACCTAGAGGAGGAGCTGAAAATTGTTACCAACAACTTGAAATCCCTGGAGGCCCAGGCGGACAAGT
ATTCCACCAAAGAAGATAAATATGAAGAGGAAATCAAACTGCTGGAGGAGAAGCTGAAAGAGGCTGAGACCCGAGCAGAG
TTTGCTGAAAGGTCTGTGGCAAAGTTGGAGAAAACCATCGATGATCTAGAAGAGAGCACCTCTAACACCACCACGGAGCA
CTGGTTCACTCCTGAGACCCTGGCTCTTACAGACACCCCCACCCACTGCACTGAGCCTACCCACCAAACAACATGGCCCA
CTCTGAAACCCCTCTGCACAAGCCCTCCCAGGCTGTCACTCTCTGACTCACTGCTGCATGCAGGCACATGTGACCCCGTC
AAA

Library Parental gene expression (RPM)
SRP051959_colon 127 .36 RPM
SRP051959_heart 200 .22 RPM
SRP051959_kidney 16 .93 RPM
SRP051959_liver 17 .05 RPM
SRP051959_lung 40 .93 RPM
SRP051959_lymph_node 5 .02 RPM
SRP051959_skeletal_muscle 471 .31 RPM
SRP051959_spleen 15 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000004355 within_species_paralog 2 retrogenes
retro_cjac_2200, retro_cjac_691,
Callithrix jacchus ENSCJAG00000009747 within_species_paralog 9 retrogenes
retro_cjac_1232, retro_cjac_1509, retro_cjac_1580, retro_cjac_1910, retro_cjac_2476, retro_cjac_3121, retro_cjac_527, retro_cjac_785, retro_cjac_798,
Callithrix jacchus ENSCJAG00000014135 within_species_paralog 1 retrogene
retro_cjac_206,
Erinaceus europaeus ENSEEUG00000005022 ortholog_one2one 1 retrogene
retro_eeur_31,
Mustela putorius furo ENSMPUG00000005359 ortholog_one2one 1 retrogene
retro_mputfur_647,
Otolemur garnettii ENSOGAG00000011793 possible_ortholog 1 retrogene
retro_ogar_988,
Rattus norvegicus ENSRNOG00000016731 possible_ortholog 1 retrogene
retro_rnor_1520,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1839 92.66 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cjac_1894 67.94 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000009627 retrocopies