RetrogeneDB ID: | retro_cjac_1580 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 17:8215632..8216264(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000005535 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000009747 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.4 % |
Parental protein coverage: | 85.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIEN |
RAERLQREVEGERRAREQAEA.VASLNRRIQLVEE.LD.AQE..ATALQKLEEAEKAADESERGMKVIEN | |
Retrocopy | RAERLQREVEGERRAREQAEAKVASLNRRIQLVEEKLDHAQEHPATALQKLEEAEKAADESERGMKVIEN |
Parental | RALKDEEKMELQEIQLKEAKHIAEEADRKYEEVA-RKLVIIEGDLERTEERAELAESRCREMDEQIRLMD |
RALKDEEKMELQEIQLKEAKHIA..ADRKYEEV...KLVIIEGDLERTEERAELAESRCREMDEQIRLMD | |
Retrocopy | RALKDEEKMELQEIQLKEAKHIAGKADRKYEEVV<HKLVIIEGDLERTEERAELAESRCREMDEQIRLMD |
Parental | QNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQ |
QNLK.LSAAEEKYSQKEDKYEE.IKILTDKL.EAETRAEFAERSVAKLEK.IDDLEDKLKCTKEEHLCTQ | |
Retrocopy | QNLKFLSAAEEKYSQKEDKYEEKIKILTDKLREAETRAEFAERSVAKLEKAIDDLEDKLKCTKEEHLCTQ |
Parental | RM |
RM | |
Retrocopy | RM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .07 RPM | 68 .16 RPM |
SRP051959_heart | 0 .00 RPM | 20 .50 RPM |
SRP051959_kidney | 0 .07 RPM | 33 .86 RPM |
SRP051959_liver | 0 .02 RPM | 34 .29 RPM |
SRP051959_lung | 0 .16 RPM | 91 .80 RPM |
SRP051959_lymph_node | 0 .16 RPM | 96 .96 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 20 .29 RPM |
SRP051959_spleen | 0 .06 RPM | 93 .74 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000004355 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000009627 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000009747 | 9 retrocopies |
retro_cjac_1232, retro_cjac_1509, retro_cjac_1580 , retro_cjac_1910, retro_cjac_2476, retro_cjac_3121, retro_cjac_527, retro_cjac_785, retro_cjac_798,
|
Callithrix jacchus | ENSCJAG00000014135 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012668 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010990 | 8 retrocopies | |
Pongo abelii | ENSPPYG00000000787 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000017441 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000006556 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000023525 | 6 retrocopies |