Parental gene:

ENSCJAG00000010077

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:11:77238804..77298359(+)


>ENSCJAG00000010077
ATGGTTTCAATCCCAGAATACTATGAAGGCAAGAATGTCCTCCTCACAGGAGCTACTGGTTTTCTAGGGAAGGTGCTTCT
GGAAAAGTTGCTGAGATCTTGTCCTAAGGTGAATTCAGTGTATGTTTTGGTGAGGCAGAAAGCTAGACAGACACCACAAG
AGCGAGTAGAAGAAATCCTTAGTGGCAAGCTCTTTGACAGATTGAGAGATGAAAATCCAGATTTTAGAGAGAAAATTATA
GCAATCAACAGCGAACTCACCCAACCTAAACTGGCTCTCAGTGAAGAAGATAAAGAGGTGATCATAGATTCTACCAATAT
TATATTCCACTGTGCAGCTACAGTAAGGTTTAATGAAAATTTAAGAGATGCTGTTCAGTTAAATGTGATTGCAACACGAC
AGCTTATTCTCCTTGCACAACAAATGAAGAATCTGGAAGTGTTCATGCATGTATCAACAGCATATGCCTACTGTAATCGA
AAGCATATTGATGAAGTAGTCTACCCACCACCTGTGGATCCCAAGAAGCTGATTGATTCTTTAGAGTGGATGGATGATGG
CCTAGTAAATGATATCACGCCAAAATTGATAGGAGACAGACCTAATACCTACATATACACAAAAGCATTGGCAGAATATG
TTGTACAACAAGAAGGAGCAAAGCTAAATGTGGCGATTATAAGGCCATCGATTGTTGGTGCCAGTTGGAAAGAACCTTTT
CCAGGATGGATTGATAACTTTAATGGACCAAGTGGGCTCTTTATTGCAGCAGGGAAAGGAATTCTTCGAACAATGCGTGC
CTCCAACAGTGCCCTTGCAGATCTTGTTCCTGTAGACGTAGTTGTCAACATGAGTCTTGCAGCAGCCTGGTATTCCGGAG
TTAATAGACCACGAAACATCATGGTGTATAATTGTACAACAGGCAGCACTAATCCTTTCCACTGGGGTGAAGTTGAATAC
CATGTAATTTCCACTTTCAAGAGGAATCCTCTCGAACAGGCCTTCAGACGGCCCAATGTAAATCTAACCTCCAATCACCT
TTTATATCATTACTGGATTGCTGTAAGCCATAAGGCCCCAGCATTCCTGTATGATATCTACCTCAGGATGACTGGAAGAA
GCCCAAGGATGATGAAAGCAATTACTCGTCTTCACAAAGCTATGATGTTTCTTGAATATTTCACAAGTAATTCTTGGGTT
TGGAATACTGACAATGTCAATATGTTAATTAATCAACTAAACCCTGAAGATAAAAAGACCTTCAATATTGATGTACGGCA
GTTACATTGGGCAGAATATATAGAGAACTACTGTATGGGAACTAAGAAGTACGTGTTGAATGAAGAAATGTCTGGCCTCC
CTGCAGCCAGAAAACATCTGAACAAGTTGCGGAATATACGTTATGGTTTTAATACTATCCTTGTGATCCTCATCTGGCGC
ATTTTTATTGCAAGATCACAGATGGCAAGAAACATCTGGTACTTTGTGGTTAGTCTGTGTTACAAGTTTCTGTCATACTT
CCGAGCATCCAGCACTATGAGATACTGA

Library Parental gene expression (RPM)
SRP051959_colon 23 .72 RPM
SRP051959_heart 24 .92 RPM
SRP051959_kidney 23 .12 RPM
SRP051959_liver 5 .26 RPM
SRP051959_lung 25 .08 RPM
SRP051959_lymph_node 26 .32 RPM
SRP051959_skeletal_muscle 11 .14 RPM
SRP051959_spleen 41 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000003490 ortholog_one2many 2 retrogenes
retro_chof_1358, retro_chof_1733,
Cavia porcellus ENSCPOG00000002654 ortholog_one2many 1 retrogene
retro_cpor_267,
Homo sapiens ENSG00000197601 ortholog_one2many 1 retrogene
retro_hsap_1225,
Gorilla gorilla ENSGGOG00000001180 ortholog_one2many 1 retrogene
retro_ggor_958,
Macaca mulatta ENSMMUG00000011990 ortholog_one2many 1 retrogene
retro_mmul_1301,
Nomascus leucogenys ENSNLEG00000017695 ortholog_one2many 1 retrogene
retro_nleu_698,
Oryctolagus cuniculus ENSOCUG00000004336 ortholog_one2many 2 retrogenes
retro_ocun_1056, retro_ocun_790,
Otolemur garnettii ENSOGAG00000005064 ortholog_one2many 2 retrogenes
retro_ogar_1353, retro_ogar_341,
Pongo abelii ENSPPYG00000003470 ortholog_one2many 1 retrogene
retro_pabe_1019,
Pan troglodytes ENSPTRG00000024190 ortholog_one2many 1 retrogene
retro_ptro_840,
Rattus norvegicus ENSRNOG00000013176 ortholog_one2many 1 retrogene
retro_rnor_467,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_545 93.43 55.92
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Download FASTA sequences of all ENSCJAG00000010077 retrocopies