Parental gene:

LYPLA1, ENSCJAG00000011562

Aliases:None
Description:lysophospholipase I [Source:HGNC Symbol;Acc:6737]
Organism:Marmoset (Callithrix jacchus)
Coordinates:16:7006539..7043553(-)


>ENSCJAG00000011562
ATGTGCGGCAATAACATGTCAGCCCAGCTGCCCGCCGTTGTCCCCGCTGCCCGGAAGGCCACCGCCGCGGTGATTTTCCT
TCATGGATTGGGAGATACTGGGCACGGATGGGCAGAAGCCTTTGCAGGTATCAGAAGTTCACATATCAAATATATCTGCC
CGCATGCGCCTGTTATGCCTGTTACACTAAATATGAACATGGCTATGCCTTCATGGTTTGATATTATTGGGCTTTCACCA
GATTCACAGGAGGATGAACCTGGGATTAAACAGGCTGCAGAAAACATAAAAGCTTTGATTGATCAAGAAGTGAAGAATGG
CATTCCTTCAAACAGAATTATTTTGGGAGGATTTTCTCAGGGAGGAGCTTTATCTTTATATACTGCCCTTACCATGCAGC
AGAAACTGGCGGGTGTCACTGCACTCAGTTGCTGGCTTCCACTTCGGGCATCATTTCCACAGGGGCCTATCAGTGGTGCC
AATAGAGATATTTCTATTCTTCAGTGCCACGGAGATTGTGACCCTTTAGTTCCCCTGATGTTTGGTTCTCTTACGGTTGA
AAAACTAAAAACATTGGTGAATCCAGCCAATGTGACCTTTAAAACCTATGAAGGTATGATGCACAGTTCATGTCAACAGG
AAATGATGGATGTCAAGCAATTCATTGATAAAGTCCTACCTCCAATTGATTGA

Library Parental gene expression (RPM)
SRP051959_spleen 20 .61 RPM
SRP051959_skeletal_muscle 23 .78 RPM
SRP051959_lymph_node 17 .01 RPM
SRP051959_lung 22 .21 RPM
SRP051959_liver 37 .15 RPM
SRP051959_kidney 40 .80 RPM
SRP051959_heart 22 .87 RPM
SRP051959_colon 30 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000006978 ortholog_one2one 1 retrogene
retro_cfam_523,
Callithrix jacchus ENSCJAG00000020914 within_species_paralog 1 retrogene
retro_cjac_2585,
Cavia porcellus ENSCPOG00000022715 ortholog_one2one 3 retrogenes
retro_cpor_142, retro_cpor_549, retro_cpor_782,
Dipodomys ordii ENSDORG00000001479 ortholog_one2one 1 retrogene
retro_dord_88,
Equus caballus ENSECAG00000016530 ortholog_one2one 1 retrogene
retro_ecab_238,
Echinops telfairi ENSETEG00000001727 ortholog_one2one 2 retrogenes
retro_etel_612, retro_etel_791,
Homo sapiens ENSG00000120992 ortholog_one2one 3 retrogenes
retro_hsap_3078, retro_hsap_3485, retro_hsap_3897,
Myotis lucifugus ENSMLUG00000008208 ortholog_one2many 1 retrogene
retro_mluc_1683,
Macaca mulatta ENSMMUG00000013157 ortholog_one2many 3 retrogenes
retro_mmul_1734, retro_mmul_2459, retro_mmul_2474,
Nomascus leucogenys ENSNLEG00000001027 ortholog_one2many 4 retrogenes
retro_nleu_1137, retro_nleu_2015, retro_nleu_2817, retro_nleu_2869,
Oryctolagus cuniculus ENSOCUG00000006751 ortholog_one2many 3 retrogenes
retro_ocun_1510, retro_ocun_1623, retro_ocun_1679,
Pongo abelii ENSPPYG00000018590 ortholog_one2one 3 retrogenes
retro_pabe_2550, retro_pabe_3177, retro_pabe_3565,
Pteropus vampyrus ENSPVAG00000005246 ortholog_one2one 2 retrogenes
retro_pvam_224, retro_pvam_838,
Rattus norvegicus ENSRNOG00000008320 possible_ortholog 3 retrogenes
retro_rnor_1747, retro_rnor_2612, retro_rnor_406,
Tarsius syrichta ENSTSYG00000012350 ortholog_one2one 6 retrogenes
retro_tsyr_1287, retro_tsyr_1303, retro_tsyr_1465, retro_tsyr_1901, retro_tsyr_1996, retro_tsyr_2158,
Tursiops truncatus ENSTTRG00000011836 ortholog_one2one 3 retrogenes
retro_ttru_1643, retro_ttru_169, retro_ttru_291,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1260 70.70 67.39
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2. retro_cjac_3100 66.81 100.00
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Download FASTA sequences of all ENSCJAG00000011562 retrocopies