RetrogeneDB ID: | retro_cpor_142 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_0:80896738..80897105(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LYPLA1 | ||
Ensembl ID: | ENSCPOG00000022715 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.8 % |
Parental protein coverage: | 59.42 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | IPSNRIILGGFSQGGAL-SLYTALTTQQKLA-GVTALSCWLPLRASFPQGPISGVNKDISILQCHGDCDP |
IPSNRIILGGFSQ.G....LYT.LTTQ.KLA..V.ALS.WLPL....PQG.ISG..KD.S..QCHGD..P | |
Retrocopy | IPSNRIILGGFSQRGII<NLYTTLTTQSKLA<SVIALSSWLPLGV*IPQGAISGTDKDVSVVQCHGDSNP |
Parental | LVPLMFGSLTAEKLKSLVNPANVTFKTYEGMMHSSCQQEMMDVKQFIDRLLPPID |
L..LMF.S.T.EKLK.L.NPANV.FKTY...MHSS.QQE..DVKQFID.LLPP.D | |
Retrocopy | LFLLMFSSSTVEKLKLLLNPANVIFKTYKDIMHSSFQQEIVDVKQFIDKLLPPTD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .67 RPM |
SRP017611_kidney | 0 .00 RPM | 50 .77 RPM |
SRP017611_liver | 0 .04 RPM | 51 .45 RPM |
SRP040447_lung | 0 .00 RPM | 19 .39 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 9 .15 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000006978 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000011562 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000022715 | 3 retrocopies |
retro_cpor_142 , retro_cpor_549, retro_cpor_782,
|
Dipodomys ordii | ENSDORG00000001479 | 1 retrocopy | |
Equus caballus | ENSECAG00000016530 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001727 | 2 retrocopies | |
Homo sapiens | ENSG00000120992 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000008208 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013157 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001027 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006751 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000018590 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000005246 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000008320 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000012350 | 6 retrocopies | |
Tursiops truncatus | ENSTTRG00000011836 | 3 retrocopies |