Parental gene:

ENSCJAG00000012702

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:19:17724449..17733135(-)


>ENSCJAG00000012702
ATGGCTCGTACAAAGCAGACTGCCCGCAAATCTACCGGTGGTAAAGCACCCAGGAAGCAACTGGCTACAAAAGCCGCTCG
CAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGGCCTGGTACTGTGGCACTCCGTGAAATTAGAC
GTTATCAGAAGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGTCTGGTGCGAGAAATTGCTCAGGACTTTAAA
ACAGATCTGCGCTTCCAGAGCGCAGCTATTGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGA
CACCAACCTTTGTGCTATCCATGCCAAACGTGTAACAATTATGCCAAAAGATATCCAGCTAGCACGCCGCATACGTGGAG
AGCGTGCTTAA

Library Parental gene expression (RPM)
SRP051959_colon 17 .53 RPM
SRP051959_heart 7 .95 RPM
SRP051959_kidney 9 .07 RPM
SRP051959_liver 7 .99 RPM
SRP051959_lung 13 .16 RPM
SRP051959_lymph_node 12 .81 RPM
SRP051959_skeletal_muscle 6 .16 RPM
SRP051959_spleen 11 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000024843 possible_ortholog 2 retrogenes
retro_dnov_1624, retro_dnov_775,
Equus caballus ENSECAG00000006904 ortholog_many2many 1 retrogene
retro_ecab_916,
Equus caballus ENSECAG00000016948 ortholog_many2many 1 retrogene
retro_ecab_266,
Homo sapiens ENSG00000132475 possible_ortholog 11 retrogenes
retro_hsap_1212, retro_hsap_1552, retro_hsap_2180, retro_hsap_24, retro_hsap_2971, retro_hsap_3231, retro_hsap_3294, retro_hsap_3299, retro_hsap_389, retro_hsap_4236, retro_hsap_911,
Latimeria chalumnae ENSLACG00000004118 possible_ortholog 1 retrogene
retro_lcha_104,
Loxodonta africana ENSLAFG00000008083 possible_ortholog 3 retrogenes
retro_lafr_837, retro_lafr_959, retro_lafr_99,
Microcebus murinus ENSMICG00000002139 ortholog_one2many 2 retrogenes
retro_mmur_36, retro_mmur_371,
Mustela putorius furo ENSMPUG00000004555 possible_ortholog 4 retrogenes
retro_mputfur_389, retro_mputfur_82, retro_mputfur_99, retro_mputfur_990,
Oreochromis niloticus ENSONIG00000019975 possible_ortholog 5 retrogenes
retro_onil_41, retro_onil_46, retro_onil_56, retro_onil_60, retro_onil_63,
Pongo abelii ENSPPYG00000008636 possible_ortholog 1 retrogene
retro_pabe_2662,
Pan troglodytes ENSPTRG00000009655 ortholog_one2many 12 retrogenes
retro_ptro_1742, retro_ptro_1915, retro_ptro_2009, retro_ptro_2227, retro_ptro_2231, retro_ptro_2234, retro_ptro_2238, retro_ptro_2640, retro_ptro_2879, retro_ptro_631, retro_ptro_695, retro_ptro_830,
Tupaia belangeri ENSTBEG00000016171 ortholog_one2many 7 retrogenes
retro_tbel_3459, retro_tbel_3605, retro_tbel_3824, retro_tbel_3856, retro_tbel_4243, retro_tbel_4350, retro_tbel_674,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_68 95.59 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cjac_145 99.26 100.00
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_cjac_198 100.00 100.00
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_cjac_201 98.53 100.00
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_cjac_224 100.00 100.00
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_cjac_235 98.53 100.00
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_cjac_238 95.59 100.00
Please wait, loading
Please wait, loading
Please wait, loading
8. retro_cjac_307 95.59 100.00
Please wait, loading
Please wait, loading
Please wait, loading
9. retro_cjac_334 97.06 100.00
Please wait, loading
Please wait, loading
Please wait, loading
10. retro_cjac_366 100.00 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000012702 retrocopies