RetrogeneDB ID: | retro_tbel_3856 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_2402:328489..328895(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3B | ||
Ensembl ID: | ENSTBEG00000016171 | ||
Aliases: | None | ||
Description: | H3 histone, family 3B (H3.3B) [Source:HGNC Symbol;Acc:4765] |
Percent Identity: | 86.23 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MARTKQTA-RKSTGGKAPRK-QLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF |
MA.TKQTA.RKS.GGKAPRK...ATKAA.KSAPSTGGVKKPH.YRPGTVALREIRRYQKSTELLIRKLPF | |
Retrocopy | MAHTKQTA<RKSNGGKAPRK<ERATKAACKSAPSTGGVKKPHHYRPGTVALREIRRYQKSTELLIRKLPF |
Parental | QRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
Q..V.EIAQDFKTDLRFQSAAIGALQE.SEAY..GLFEDTNLC.IHAK.VTIMPKD.QLAR.IRG.RA | |
Retrocopy | QCPV*EIAQDFKTDLRFQSAAIGALQEVSEAYFIGLFEDTNLCVIHAKHVTIMPKDVQLARCIRGQRA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012702 | 10 retrocopies | |
Equus caballus | ENSECAG00000006904 | 1 retrocopy | |
Equus caballus | ENSECAG00000016948 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000004118 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002139 | 2 retrocopies | |
Oreochromis niloticus | ENSONIG00000019975 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000008636 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009655 | 12 retrocopies | |
Tupaia belangeri | ENSTBEG00000006177 | 13 retrocopies | |
Tupaia belangeri | ENSTBEG00000016171 | 7 retrocopies |
retro_tbel_3459, retro_tbel_3605, retro_tbel_3824, retro_tbel_3856 , retro_tbel_4243, retro_tbel_4350, retro_tbel_674,
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