Parental gene:

H3F3B, ENSTBEG00000016171

Aliases:None
Description:H3 histone, family 3B (H3.3B) [Source:HGNC Symbol;Acc:4765]
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_2296:266923..267532(-)


>ENSTBEG00000016171
ATGGCCCGAACCAAGCAGACTGCTCGTAAATCCACTGGCGGGAAAGCCCCGCGCAAACAGCTGGCCACCAAAGCGGCCAG
GAAAAGCGCCCCCTCTACTGGCGGGGTGAAGAAACCTCACCGCTACAGGCCCGGGACCGTAGCGCTTCGAGAGATTCGTC
GTTACCAGAAATCCACCGAGCTGCTCATCCGGAAGCTGCCCTTCCAGAGGTTGGTGAGGGAGATCGCCCAGGACTTCAAA
ACCGACTTGAGGTTTCAGAGCGCCGCCATCGGTGCGCTTCAGGAGGCTAGTGAAGCGTACCTGGTGGGTTTGTTTGAAGA
TACTAATCTGTGTGCCATCCACGCTAAGAGAGTCACCATCATGCCCAAAGACATCCAGTTGGCTCGCCGGATACGGGGAG
AGAGAGCTTAA

Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000012702 ortholog_one2many 10 retrogenes
retro_cjac_145, retro_cjac_198, retro_cjac_201, retro_cjac_224, retro_cjac_235, retro_cjac_238, retro_cjac_307, retro_cjac_334, retro_cjac_366, retro_cjac_68,
Equus caballus ENSECAG00000006904 ortholog_one2many 1 retrogene
retro_ecab_916,
Equus caballus ENSECAG00000016948 ortholog_one2many 1 retrogene
retro_ecab_266,
Latimeria chalumnae ENSLACG00000004118 possible_ortholog 1 retrogene
retro_lcha_104,
Microcebus murinus ENSMICG00000002139 ortholog_one2one 2 retrogenes
retro_mmur_36, retro_mmur_371,
Oreochromis niloticus ENSONIG00000019975 possible_ortholog 5 retrogenes
retro_onil_41, retro_onil_46, retro_onil_56, retro_onil_60, retro_onil_63,
Pongo abelii ENSPPYG00000008636 possible_ortholog 1 retrogene
retro_pabe_2662,
Pan troglodytes ENSPTRG00000009655 ortholog_one2one 12 retrogenes
retro_ptro_1742, retro_ptro_1915, retro_ptro_2009, retro_ptro_2227, retro_ptro_2231, retro_ptro_2234, retro_ptro_2238, retro_ptro_2640, retro_ptro_2879, retro_ptro_631, retro_ptro_695, retro_ptro_830,
Tupaia belangeri ENSTBEG00000006177 within_species_paralog 13 retrogenes
retro_tbel_110, retro_tbel_1274, retro_tbel_15, retro_tbel_170, retro_tbel_2335, retro_tbel_3341, retro_tbel_3342, retro_tbel_3820, retro_tbel_391, retro_tbel_487, retro_tbel_592, retro_tbel_783, retro_tbel_978,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tbel_674 77.67 75.00
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2. retro_tbel_3459 85.19 99.26
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3. retro_tbel_3605 68.35 100.00
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4. retro_tbel_3824 83.94 100.00
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5. retro_tbel_3856 86.23 100.00
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6. retro_tbel_4243 75.18 100.00
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7. retro_tbel_4350 69.42 86.76
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Download FASTA sequences of all ENSTBEG00000016171 retrocopies