Parental gene: | PPP2CA, ENSCJAG00000013634 |
| Aliases: | None |
| Description: | protein phosphatase 2, catalytic subunit, alpha isozyme [Source:HGNC Symbol;Acc:9299] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 2:71082993..71116685(+) |
>ENSCJAG00000013634
ATGGACGAGAAGGTGTTCACCAAGGAGCTGGACCAGTGGATCGAGCAGCTGAACGAGTGCAAGCAGCTGTCCGAGTCCCA
GGTCAAGAGCCTCTGCGAGAAGGCTAAAGAAATCCTGACGAAAGAATCCAATGTGCAAGAGGTTCGATGTCCAGTCACTG
TCTGTGGAGATGTGCATGGGCAATTTCATGATCTCATGGAACTGTTTAGAATTGGTGGCAAATCACCAGATACAAATTAC
TTGTTTATGGGAGATTATGTTGACAGAGGATATTATTCAGTTGAAACAGTTACACTGCTTGTAGCTCTTAAGGTTCGTTA
CCGTGAACGCATCACCATTCTTCGAGGGAATCATGAGAGCAGACAGATCACACAAGTTTATGGTTTCTATGATGAATGTT
TAAGAAAATACGGAAATGCAAATGTTTGGAAATATTTTACAGATCTTTTTGACTATCTTCCTCTCACTGCCTTGGTGGAT
GGGCAGATATTCTGTCTACATGGTGGTCTCTCGCCATCTATAGATACACTGGATCATATCAGAGCACTTGATCGCCTACA
AGAAGTTCCACATGAGGGTCCAATGTGTGACTTGCTGTGGTCAGATCCAGATGACCGTGGTGGTTGGGGTATATCTCCTC
GGGGAGCTGGTTACACCTTTGGACAAGATATATCTGAGACATTTAATCATGCCAATGGCCTCACGTTGGTGTCTAGAGCT
CACCAGCTAGTGATGGAGGGATATAACTGGTGCCATGACCGGAATGTAGTAACGATTTTCAGTGCTCCAAACTATTGTTA
TCGTTGTGGTAACCAAGCTGCAATCATGGAACTTGATGATACTCTAAAATACTCTTTCTTGCAGTTTGACCCAGCACCTC
GTAGAGGCGAGCCACATGTTACTCGTCGTACCCCAGACTACTTCCTGTAA
ATGGACGAGAAGGTGTTCACCAAGGAGCTGGACCAGTGGATCGAGCAGCTGAACGAGTGCAAGCAGCTGTCCGAGTCCCA
GGTCAAGAGCCTCTGCGAGAAGGCTAAAGAAATCCTGACGAAAGAATCCAATGTGCAAGAGGTTCGATGTCCAGTCACTG
TCTGTGGAGATGTGCATGGGCAATTTCATGATCTCATGGAACTGTTTAGAATTGGTGGCAAATCACCAGATACAAATTAC
TTGTTTATGGGAGATTATGTTGACAGAGGATATTATTCAGTTGAAACAGTTACACTGCTTGTAGCTCTTAAGGTTCGTTA
CCGTGAACGCATCACCATTCTTCGAGGGAATCATGAGAGCAGACAGATCACACAAGTTTATGGTTTCTATGATGAATGTT
TAAGAAAATACGGAAATGCAAATGTTTGGAAATATTTTACAGATCTTTTTGACTATCTTCCTCTCACTGCCTTGGTGGAT
GGGCAGATATTCTGTCTACATGGTGGTCTCTCGCCATCTATAGATACACTGGATCATATCAGAGCACTTGATCGCCTACA
AGAAGTTCCACATGAGGGTCCAATGTGTGACTTGCTGTGGTCAGATCCAGATGACCGTGGTGGTTGGGGTATATCTCCTC
GGGGAGCTGGTTACACCTTTGGACAAGATATATCTGAGACATTTAATCATGCCAATGGCCTCACGTTGGTGTCTAGAGCT
CACCAGCTAGTGATGGAGGGATATAACTGGTGCCATGACCGGAATGTAGTAACGATTTTCAGTGCTCCAAACTATTGTTA
TCGTTGTGGTAACCAAGCTGCAATCATGGAACTTGATGATACTCTAAAATACTCTTTCTTGCAGTTTGACCCAGCACCTC
GTAGAGGCGAGCCACATGTTACTCGTCGTACCCCAGACTACTTCCTGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 43 .07 RPM |
| SRP051959_skeletal_muscle | 60 .86 RPM |
| SRP051959_lymph_node | 43 .29 RPM |
| SRP051959_lung | 40 .75 RPM |
| SRP051959_liver | 30 .37 RPM |
| SRP051959_kidney | 40 .98 RPM |
| SRP051959_heart | 54 .08 RPM |
| SRP051959_colon | 47 .90 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000002653 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000012460 | within_species_paralog | 1 retrogene | |
| Homo sapiens | ENSG00000113575 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000026729 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000009695 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000005389 | ortholog_one2one | 5 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000016632 | ortholog_one2one | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000010560 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1346 | 94.92 | 82.52 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_4113 | 82.89 | 95.79 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000013634 retrocopies