Parental gene: | SCD, ENSCJAG00000017338 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 12:87628936..87650413(+) |
>ENSCJAG00000017338
CAGCCTGGCCCCGCACCGCAGGTCCAGATCTCTAGCTCCTATACCACCACCACCACCATCACAGCGCCTCCCTCCAGGGT
CCCGCAGAATGGAGGAGATAAGTTGGAGAAGACGCCCCTCTATTTGGAAGAAGACATTCGCCCAGATATGAAAGATGATA
TATATGACCCCACCTACAAGGATAAGGAAGGCCCAAGGCCCAAGGTTGAGTATGTCTGGAGAAACATCATCCTGATGTCT
CTGCTACACTTGGGCGCCCTGTATGGGATCATTTTGATTCCTACCTGCAAGTTCTACACCTGGCTTTGGGGGTTATTCTA
CTATTTTGTCAGTGCCCTGGGCATAACAGCGGGAGTTCATCGCCTGTGGAGCCACCGAACTTACAAAGCTCGGCTGCCCC
TGCGGGTCTTTCTGATCATTGCCAACACAATGGCATTCCAGAATGATGTCTTTGAATGGGCTCGTGACCACCGTGCCCAC
CACAAGTTTTCAGAAACAGATGCTGATCCTCATAATTCCCGACGTGGCTTTTTCTTTTCTCACGTGGGCTGGCTGCTTGT
GCGCAAACACCCAGCTGTCAAAGAGAAGGGCGGTACGCTGGACTTGTCTGACCTAAAAGCTGAGAAACTGGTGATGTTCC
AGAGGAGGTACTACAAACCTGGTGTGCTGCTGATGTGCTTCATCCTGCCCACACTTGTGCCCTTTTATTTCTGGGGTGAA
ACTTTTCAACACAGCTTGTACGTTGCCACTTTCTTGCGATATGCTGTAGTGCTTAATGCCACCTGGCTGGTGAACAGCGC
TGCCCACCTCTACGGATATCGTCCTTATGACAAGAACATTAGCCCCCGGGAGAACATCCTGGTTTCCTTTGGAGCTGTGG
GTGAGGGCTTCCACAACTACCACCACTCCTTTCCCTATGACTACTCTGCCAGTGAGTACCGCTGGCACATCAACTTAACC
ACATTCTTCATTGATTGCATGGCTCTCCTCGGTCTGGCCTACGACCGGAAGAAAGTATCCAAGGCCGCCATCTTGGCCAG
GATTAAAAGAACTGGGGATGGAAGCTACAAGAGTGGCTGA
CAGCCTGGCCCCGCACCGCAGGTCCAGATCTCTAGCTCCTATACCACCACCACCACCATCACAGCGCCTCCCTCCAGGGT
CCCGCAGAATGGAGGAGATAAGTTGGAGAAGACGCCCCTCTATTTGGAAGAAGACATTCGCCCAGATATGAAAGATGATA
TATATGACCCCACCTACAAGGATAAGGAAGGCCCAAGGCCCAAGGTTGAGTATGTCTGGAGAAACATCATCCTGATGTCT
CTGCTACACTTGGGCGCCCTGTATGGGATCATTTTGATTCCTACCTGCAAGTTCTACACCTGGCTTTGGGGGTTATTCTA
CTATTTTGTCAGTGCCCTGGGCATAACAGCGGGAGTTCATCGCCTGTGGAGCCACCGAACTTACAAAGCTCGGCTGCCCC
TGCGGGTCTTTCTGATCATTGCCAACACAATGGCATTCCAGAATGATGTCTTTGAATGGGCTCGTGACCACCGTGCCCAC
CACAAGTTTTCAGAAACAGATGCTGATCCTCATAATTCCCGACGTGGCTTTTTCTTTTCTCACGTGGGCTGGCTGCTTGT
GCGCAAACACCCAGCTGTCAAAGAGAAGGGCGGTACGCTGGACTTGTCTGACCTAAAAGCTGAGAAACTGGTGATGTTCC
AGAGGAGGTACTACAAACCTGGTGTGCTGCTGATGTGCTTCATCCTGCCCACACTTGTGCCCTTTTATTTCTGGGGTGAA
ACTTTTCAACACAGCTTGTACGTTGCCACTTTCTTGCGATATGCTGTAGTGCTTAATGCCACCTGGCTGGTGAACAGCGC
TGCCCACCTCTACGGATATCGTCCTTATGACAAGAACATTAGCCCCCGGGAGAACATCCTGGTTTCCTTTGGAGCTGTGG
GTGAGGGCTTCCACAACTACCACCACTCCTTTCCCTATGACTACTCTGCCAGTGAGTACCGCTGGCACATCAACTTAACC
ACATTCTTCATTGATTGCATGGCTCTCCTCGGTCTGGCCTACGACCGGAAGAAAGTATCCAAGGCCGCCATCTTGGCCAG
GATTAAAAGAACTGGGGATGGAAGCTACAAGAGTGGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 12 .27 RPM |
| SRP051959_skeletal_muscle | 41 .34 RPM |
| SRP051959_lymph_node | 4 .09 RPM |
| SRP051959_lung | 49 .47 RPM |
| SRP051959_liver | 2504 .81 RPM |
| SRP051959_kidney | 22 .14 RPM |
| SRP051959_heart | 126 .52 RPM |
| SRP051959_colon | 29 .60 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000099194 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000010817 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000002566 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000002847 | ortholog_one2one | 1 retrogene | |
| Drosophila melanogaster | FBgn0086687 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1077 | 91.46 | 55.15 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2348 | 91.11 | 99.72 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000017338 retrocopies