>retro_mmul_1636
ATCTCTAGCTCCCGTACCACCACCACCACCATCACAGCGCCTCCCTCCAGGGTCCTGCAGAATGGGGGAGATAAGTTGGA
GACGATGCCCCTCTACTTGGAAGAAGACATTCGCCCTGGTATAAAAGATGATATATATGACCCCACCTATAATGATAAGG
AAGGCCCAAGCCCCAAGGTTAATTATGTCTGGAGAAACGTCATCCTTATGTCTCTGCTACACTTGGGTGCCCTGTTTGGG
ATCACTTTGATTCCTACCTGCAAGTTCTACTCCTGGCTTTGGGGGTTATTCTACTATTTTGTCAGGGCCCTGGACATAAC
AGCAGGAGCTCATCCTCTGTGGAGCCACCCCTCTTACAAAGCTCGGCTGCCCCTGCGGCTCTTTCTGATCATTGCCAACA
CAATGGCATTCCAGAATGGTATCTATGAATGGGCTCACGACCACCATGCCCATCACAAGTTTTCAGAAACACATGCTGAT
CTCGTAATTCCAGACATGGCTTTGTCTTCTCTCACGTGGGTTGGCTGTGCAAACACTCAGCTGTCAAAGAGAAGGGTGGT
ACGCTAGACTTGTCTGATCTAGAAGCCGAGAAACTGGTGATGTTCCAGAGGGGGTACTACAAACCCCGGTTTGCTGCTGA
TATGTGCTTCACCCTGCCCACGCTTGTGCCCTGGTGTTTCTGGGGTGAAACTTTTCAACACAGCTTGTTCATTGCCACCT
TCTTGCGGTATGCTGTAGTGCTTCATGCCACCTGGCTGGTGAACAGTGCTGCTCACCTCTTCGGATATCGTCCTTATGAC
AAGAACATTAGTCCCCGGGAGAATGTCCTGGTTTCACCTGGAGCTGTTGGTGAGGGCTTCCACGAGTACCACCACTCCTT
TCCCTATGACTACTGTGCCAGTGAGTACTGCTGGCACATCAGCTTCACCACATTCTTCATTGATTGCATGGCC
ORF - retro_mmul_1636 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
84.74 % |
Parental protein coverage: |
97.26 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | ISSSYTTTTTITAPPSRVLQNGRDKLETTPLYLEEDVRPDIKDDIYDPTYKDKEGPSPKVEYVWRNIILM |
| ISSS.TTTTTITAPPSRVLQNG.DKLET.PLYLEED.RP.IKDDIYDPTY.DKEGPSPKV.YVWRN.ILM |
Retrocopy | ISSSRTTTTTITAPPSRVLQNGGDKLETMPLYLEEDIRPGIKDDIYDPTYNDKEGPSPKVNYVWRNVILM |
|
Parental | SLLHLGALYGITLIPTCKLYTCLWGLFYYVVSALGITAGAHRLWSHRSYKARLPLRLFLIIANTMAFQND |
| SLLHLGAL.GITLIPTCK.Y..LWGLFYY.V.AL.ITAGAH.LWSH.SYKARLPLRLFLIIANTMAFQN. |
Retrocopy | SLLHLGALFGITLIPTCKFYSWLWGLFYYFVRALDITAGAHPLWSHPSYKARLPLRLFLIIANTMAFQNG |
|
Parental | VYEWARDHRAHHKFSETHAD-PHNSRRGFFFSHVGWLLVRKHPAVKEKGATLDLSDLEAEKLVMFQRRYY |
| .YEWA.DH.AHHKFSETHAD...NSR.GF.FSHVGWL...KH.AVKEKG.TLDLSDLEAEKLVMFQR.YY |
Retrocopy | IYEWAHDHHAHHKFSETHAD<SRNSRHGFVFSHVGWLC--KHSAVKEKGGTLDLSDLEAEKLVMFQRGYY |
|
Parental | KPGLLL-MCFILPTLVPWCFWGETFQHSVFVATFLRYAIVLNVTWLVNSAAHLFGYRPYDKNISPRENIL |
| KP.....MCF.LPTLVPWCFWGETFQHS.F.ATFLRYA.VL..TWLVNSAAHLFGYRPYDKNISPREN.L |
Retrocopy | KPRFAADMCFTLPTLVPWCFWGETFQHSLFIATFLRYAVVLHATWLVNSAAHLFGYRPYDKNISPRENVL |
|
Parental | VSLGAVGEGFHNYHHSFPYDYSASEYRWHINFTTFFIDCMA |
| VS.GAVGEGFH.YHHSFPYDY.ASEY.WHI.FTTFFIDCMA |
Retrocopy | VSPGAVGEGFHEYHHSFPYDYCASEYCWHISFTTFFIDCMA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .90 RPM |
42 .69 RPM |
SRP007412_brain_prefrontal_cortex |
0 .08 RPM |
41 .41 RPM |
SRP007412_cerebellum |
0 .06 RPM |
30 .03 RPM |
SRP007412_heart |
0 .47 RPM |
26 .32 RPM |
SRP007412_kidney |
0 .35 RPM |
30 .05 RPM |
SRP007412_liver |
3 .17 RPM |
186 .04 RPM |
SRP007412_testis |
0 .19 RPM |
42 .07 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1636 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1636 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_1636 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
7 retrocopies.