RetrogeneDB ID: retro_dmel_78

Retrocopy location

• Organism: Fruit fly (Drosophila melanogaster)
• Coordinates: 3L:11016638..11017706(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: FBgn0029172
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: desat1
• Ensembl ID: FBgn0086687
• Aliases: None
• Description: desat1 [Source:FlyBase gene name;Acc:FBgn0086687]

Sequence

>retro_dmel_78
ATGCCACGCAATACCAAAGACACCACCGGAGTGCTTTACGAATCCGATGTCGAGACAGTAGACGGTGGATTGTCGACGGA
GCTAAGCAATCGGAAGACCACCGATGGAAGTAAACTGGAGTTGGTATGGGTCAATATAGTGCTGTTCGTGATCCTTCACA
TATCTTCGCTATATGGAGTCTGGCTGCTCTTCACTTCGGCCACGTGGACAACGGTCGTGCTCTTTTGGCCAACGGTTGTG
GTGACCATTTTGGGAGTTTCCGGCGGTGCCCATCGTTTGTGGGCTCATCGCACATTCAAGGCGAATACACCGCTCAAGCT
GATCTTTTTGTTCCTGAACACTTTGGCCTTTCAGGATGCGGTCTACTATTGGGCCCGGGATCATCGCGTCCACCACAAGT
ATACGGAAACTGATGCGGATCCGTACAATTCGCAACGTGGTTGGTTCTTTGCCCACATCGGTTGGTTGTGCTGCCGCAAG
CATCCGGAGGTTGTGGAGAAGGGCAAGCAAATAGATCTATCCGATCTGGAGGCAGATCCACTGATCATGTTCCAGAAGAA
ATACTACCTGCTGCTAATGCCAATCATTTGCTTTGTCCTGCCCACCGTTTTGCCCATGTATCTGTGGGGCGAATCACTCA
ATGTGTCCTGGCACGTGATGGCCCTGCTTCGATGGTGCCTCAGTCTCAATCTCATCTGGACGGTCAATAGCTCGGCCCAC
ATGCACGGCATGCGGCCTTACGACAAGAACATATGTCCAGTCGATCAGGGCTTCCTCATATTTTTCCGTGTGGGTGAGGG
ATACCACAACTACCACCATGTCTTTCCCTGGGACTACAAGAGCGCCGAGCTGGGCAAGTATTCGCAGGATGTGACCACCA
AGTTTATCGAATTCATGGCCTATTTGGGTTGGGCCTACGATCTAAAGAGTGTCTCACTGGATTTGGTCAAGCAGCGAGTC
CAGCGCTCTGGCGATGGATCACATCCTGTTTGGGGTTGGGGCGATAAGGATCAATTAAAGGAGGACGTGGGCGTGACCAC
CATTACCCACCAGCGAAATGAAAAGTAA

Alignment

ORF - retro_dmel_78 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.45 %
• Parental protein coverage: 91.12 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EDSTGVLFECDVETTDGGLVKDITVMKKAEKRRLKLVWRNIIAFGYLHLAALYGAYLMVTSAKWQTCILA
          .D.TGVL.E.DVET.DGGL.......K......L.LVW.NI..F..LH...LYG..L..TSA.W.T..L.
Retrocopy KDTTGVLYESDVETVDGGLSTELSNRKTTDGSKLELVWVNIVLFVILHISSLYGVWLLFTSATWTTVVLF

Parental  YFLYVISGLGITAGAHRLWAHRSYKAKWPLRVILVIFNTIAFQDAAYHWARDHRVHHKYSETDADPHNAT
          ....V...LG...GAHRLWAHR..KA..PL..I....NT.AFQDA.Y.WARDHRVHHKY.ETDADP.N..
Retrocopy WPTVVVTILGVSGGAHRLWAHRTFKANTPLKLIFLFLNTLAFQDAVYYWARDHRVHHKYTETDADPYNSQ

Parental  RGFFFSHVGWLLCKKHPEVKAKGKGVDLSDLRADPILMFQKKYYMILMPIACFIIPTVVPMYAWGESFMN
          RG.FF.H.GWL.C.KHPEV..KGK..DLSDL.ADP..MFQKKYY..LMPI.CF..PTV.PMY.WGES...
Retrocopy RGWFFAHIGWLCCRKHPEVVEKGKQIDLSDLEADPLIMFQKKYYLLLMPIICFVLPTVLPMYLWGESLNV

Parental  AWFVATMFRWCFILNVTWLVNSAAHKFGGRPYDKFINPSENISVAILAFGEGWHNYHHVFPWDYKTAEFG
          .W.V....RWC..LN..W.VNS.AH..G.RPYDK.I.P...........GEG.HNYHHVFPWDYK.AE.G
Retrocopy SWHVMALLRWCLSLNLIWTVNSSAHMHGMRPYDKNICPVDQGFLIFFRVGEGYHNYHHVFPWDYKSAELG

Parental  KYSLNFTTAFIDFFAKIGWAYDLKTVSTDIIKKRVKRTGDGTHATWGWGDVDQPKEEIEDAVITHKKSE
          KYS...TT.FI.F.A..GWAYDLK.VS.D..K.RV.R.GDG.H..WGWGD.DQ.KE......ITH...E
Retrocopy KYSQDVTTKFIEFMAYLGWAYDLKSVSLDLVKQRVQRSGDGSHPVWGWGDKDQLKEDVGVTTITHQRNE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq

Drosophila melanogaster was not studied using ChIP-Seq data.

EST

1 EST(s) were mapped to retro_dmel_78 retrocopy

EST ID	Start	End	Identity	Match	Mis-match	Score
ES696123	11016642	11017079	99.8	434	0	430

TSS

Drosophila melanogaster was not studied using FANTOM5 data.

Lab

retro_dmel_78 was not experimentally validated.

Homology

Retrocopy orthology:

Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000017338	2 retrocopies	retro_cjac_1077, retro_cjac_2348,
Homo sapiens	ENSG00000099194	1 retrocopy	retro_hsap_1733,
Macaca mulatta	ENSMMUG00000010817	1 retrocopy	retro_mmul_1636,
Pongo abelii	ENSPPYG00000002566	1 retrocopy	retro_pabe_1545,
Pan troglodytes	ENSPTRG00000002847	1 retrocopy	retro_ptro_3058,
Drosophila melanogaster	FBgn0086687	1 retrocopy	retro_dmel_78 ,