Parental gene:

ATXN3, ENSCJAG00000018025

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:117483687..117689710(-)


>ENSCJAG00000018025
ATGGAGTCCATCTTCCACGAGAAACAAGAAGGCTCACTTTGTGCTCAGCATTGCCTGAATAATTTATTGCAAGGAGAATA
TTTTAGCCCTGTGGAGTTATCCTCAATTGCACATCAGCTGGATGAGGAAGAAAGGATGAGAATGGCAGAAGGAGGAGTTA
CTAGTGAAGATTATCGCACATTTTTACAGCAGCCTTCTGGAAATATGGATGACAGTGGTTTCTTCTCTATTCAGGTTATA
AGCAATGCCTTGAAAGTTTGGGGTTTAGAACTAATCCTGTTCAACAGTCCCGAGTATCAGAGGCTCAGGATCGATCCTAT
AAATGAAAGATCATTTATATGCAATTATAAGGAACACTGGTTTACAGTTAGAAAATTAGGAAAACAGTGGTTTAACTTGA
ATTCTCTCTTGACGGGTCCAGAATTAATATCAGATACATATCTTGCACTTTTCTTGGCTCAGTTACAACAGGAAGGTTAT
TCTATATTTGTTGTTAAGGGTGATCTGCCAGATTGTGAAGCTGACCAACTTCTACAGATGATTAGGGTCCAACAGATGCA
TCGACCAAAACTTATTGGAGAAGAATTAGCACAACTAAAAGAGCAAAGAGTCCATAAAACAGACCTGGAACGAGTGTTAG
AAGCAAATGATGGCTCAGGAATGTTAGATGAAGATGAGGAGGATTTGCAGAGGGCTCTGGCACTAAGCCGCCAAGAAATT
GACATGGAAGATGAGGAAGCAGATCTCCGCAGGGCTATTCAGCTAAGTATGCAAGGTAGTTCCAGAAATATATCTCAAGA
TATTCCACAGACAACAGGTACAAATCTTACTTCAGAAGAGCTTCGGAAGAGACGAGAAGCCTACTTTGAAAAGTCAGAAA
ACAAAAGGCTCATAGCTGAATCTGAGCTATTAGAAACTATGATACAAACTTTACAGGTATATCTAAGAAAAGGAGACCCA
TCAGGACAGAGTTCACATCCATGTGAAAGGCCAACCACCAGTTCAGGAGCTCTTGGGAATGATCTAGGTAAGTCCTGCTC
ACCATTCATCATGTTTGTTACCTTCACACTTTATCTGACCAGGCTTCCTGTGATTTTTGCTTTATATTATTCTTTTTCCC
CTCTTTAA

Library Parental gene expression (RPM)
SRP051959_colon 37 .45 RPM
SRP051959_heart 28 .42 RPM
SRP051959_kidney 32 .77 RPM
SRP051959_liver 25 .56 RPM
SRP051959_lung 45 .92 RPM
SRP051959_lymph_node 41 .66 RPM
SRP051959_skeletal_muscle 10 .74 RPM
SRP051959_spleen 41 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005786 ortholog_one2many 2 retrogenes
retro_btau_1652, retro_btau_330,
Choloepus hoffmanni ENSCHOG00000005302 ortholog_one2many 1 retrogene
retro_chof_2238,
Cavia porcellus ENSCPOG00000010887 possible_ortholog 1 retrogene
retro_cpor_1460,
Homo sapiens ENSG00000066427 possible_ortholog 1 retrogene
retro_hsap_89,
Macaca mulatta ENSMMUG00000020751 possible_ortholog 1 retrogene
retro_mmul_298,
Monodelphis domestica ENSMODG00000002006 ortholog_one2many 2 retrogenes
retro_mdom_1498, retro_mdom_1573,
Nomascus leucogenys ENSNLEG00000017126 possible_ortholog 1 retrogene
retro_nleu_66,
Pongo abelii ENSPPYG00000006075 possible_ortholog 1 retrogene
retro_pabe_9,
Pteropus vampyrus ENSPVAG00000015316 ortholog_one2one 2 retrogenes
retro_pvam_1201, retro_pvam_587,
Tupaia belangeri ENSTBEG00000008099 possible_ortholog 3 retrogenes
retro_tbel_102, retro_tbel_2635, retro_tbel_3925,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_375 65.37 100.00
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2. retro_cjac_1724 94.33 54.52
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Download FASTA sequences of all ENSCJAG00000018025 retrocopies