Parental gene: | ENSCJAG00000018827 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 5:107167000..107182193(+) |
>ENSCJAG00000018827
ATGACCAAGGCCGGTAGCAAGGGCGGGAACCTCCGCGACAAGCTGGACGGTAACGAACTGGACCTGAGCCTCAGCGACCT
GAATGAAGTCCCGGTGAAGGAATTGGCTGCCCTTCCAAAGGCCACCATCCTGGATCTGTCTTGTAATAAACTGACGACTC
TACCGTCGGATTTCTGTGGACTCACACACCTGGTGAAGCTAGACCTGAGTAAGAACAAGCTGCAGCAGCTGCCAGCAGAC
TTCGGCCGCCTGGTCAACCTCCAGCACCTGGATCTCCTCAACAACAGGCTGGTCACCTTGCCTGTCAGCTTTGCTCGGCT
CAAGAACCTGAAGTGGCTGGACCTGAAGGATAACCCCCTGGATCCTGTCCTGGCCAAGGTGGCAGGTGACTGCTTGGATG
AGAAGCAGTGTAAGCAGTGTGCAAACAAGGTGTTACAGCACATGAAGGCTGTGCAGGCGGATCAGGAGCGGGAGAGGCAG
CGGCGGCTAGAAGTAGAACGTGAGGCAGAGAAGAAGCGCGAGGCCAAGCAGCGAGCTAAGGAAGCCCAGGAGCGGGAACT
GCGGAAGCGGGAGAAGGCAGAAGAGAAGGAGCGCCGGAGAAAGGAGTACGACGCCCTCAAAGCAGCTAAGCGGGAGCAGG
AGAAGAAACCTAAGAAGGAAGCAAATCAGGCCCCAAAATCTAAGTCCGGCTCCCGTCCCCGCAAGCCACCACCCCGGAAG
CACACTCGTTCCTGGGCTGTGCTGAAGCTGCTGCTGCTGCTGTTGCTATTTTGTGTGGCGGGAGGGCTAGTTGCTTGTCG
GGTGACAGAGCTGCAGCAGCAGCCCCTCTGCACCAGTGTGAACACCATCTATGACAATGCGGTCCAGGGTCTACGCCGCC
ATGAGATCCTCCAGTGGGTCCTCCAGACCGACTCTCAGCAGTGA
ATGACCAAGGCCGGTAGCAAGGGCGGGAACCTCCGCGACAAGCTGGACGGTAACGAACTGGACCTGAGCCTCAGCGACCT
GAATGAAGTCCCGGTGAAGGAATTGGCTGCCCTTCCAAAGGCCACCATCCTGGATCTGTCTTGTAATAAACTGACGACTC
TACCGTCGGATTTCTGTGGACTCACACACCTGGTGAAGCTAGACCTGAGTAAGAACAAGCTGCAGCAGCTGCCAGCAGAC
TTCGGCCGCCTGGTCAACCTCCAGCACCTGGATCTCCTCAACAACAGGCTGGTCACCTTGCCTGTCAGCTTTGCTCGGCT
CAAGAACCTGAAGTGGCTGGACCTGAAGGATAACCCCCTGGATCCTGTCCTGGCCAAGGTGGCAGGTGACTGCTTGGATG
AGAAGCAGTGTAAGCAGTGTGCAAACAAGGTGTTACAGCACATGAAGGCTGTGCAGGCGGATCAGGAGCGGGAGAGGCAG
CGGCGGCTAGAAGTAGAACGTGAGGCAGAGAAGAAGCGCGAGGCCAAGCAGCGAGCTAAGGAAGCCCAGGAGCGGGAACT
GCGGAAGCGGGAGAAGGCAGAAGAGAAGGAGCGCCGGAGAAAGGAGTACGACGCCCTCAAAGCAGCTAAGCGGGAGCAGG
AGAAGAAACCTAAGAAGGAAGCAAATCAGGCCCCAAAATCTAAGTCCGGCTCCCGTCCCCGCAAGCCACCACCCCGGAAG
CACACTCGTTCCTGGGCTGTGCTGAAGCTGCTGCTGCTGCTGTTGCTATTTTGTGTGGCGGGAGGGCTAGTTGCTTGTCG
GGTGACAGAGCTGCAGCAGCAGCCCCTCTGCACCAGTGTGAACACCATCTATGACAATGCGGTCCAGGGTCTACGCCGCC
ATGAGATCCTCCAGTGGGTCCTCCAGACCGACTCTCAGCAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 10 .59 RPM |
| SRP051959_skeletal_muscle | 5 .50 RPM |
| SRP051959_lymph_node | 7 .12 RPM |
| SRP051959_lung | 8 .18 RPM |
| SRP051959_liver | 13 .41 RPM |
| SRP051959_kidney | 9 .94 RPM |
| SRP051959_heart | 6 .89 RPM |
| SRP051959_colon | 20 .41 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Equus caballus | ENSECAG00000018072 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000108829 | ortholog_one2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000006310 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000020901 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000009066 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000008284 | ortholog_one2many | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000009398 | ortholog_one2many | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000000371 | ortholog_many2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000000207 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2342 | 70.62 | 62.21 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000018827 retrocopies