RetrogeneDB ID: | retro_pabe_2687 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:132469186..132469982(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LRRC59 | ||
Ensembl ID: | ENSPPYG00000008284 | ||
Aliases: | None | ||
Description: | leucine rich repeat containing 59 [Source:HGNC Symbol;Acc:28817] |
Percent Identity: | 80.44 % |
Parental protein coverage: | 87.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MTKAGSKGGNLRDKLDGNELDLSLS-DLNEVPVKELAALPKATILDLSCNKLTTLPSDFCGLTHLVKLDL |
MTKA.SKGGNLRDKLD.NE..L.LS...NEVPVKELAALP..TILDLSCNKLTTL.SDFCGLTHLVKL.L | |
Retrocopy | MTKASSKGGNLRDKLDCNE--LDLS>SVNEVPVKELAALPESTILDLSCNKLTTLLSDFCGLTHLVKLHL |
Parental | SKNKLQQLPADFGRLVNLQHLDLLNNRLVTLPVSFAQLKNLKWLDLKDNPLDPVLAKVAGDCLDEKQCKQ |
SKNKLQ...ADF.RLVNLQHLDLLNNRLV.LPVSFAQLKNLKWLDLKDN.LDP.LAKVA.DCLDEKQCKQ | |
Retrocopy | SKNKLQ---ADFSRLVNLQHLDLLNNRLVALPVSFAQLKNLKWLDLKDNSLDPILAKVASDCLDEKQCKQ |
Parental | CANKVLQHMKAVQADQERERQRRLEVEREAEKKREAKQRAKEAQERELRKREKAEEKERRRKEYDALKAA |
CA..VLQH.KAV..DQE.ERQR...VEREAEKK.EAKQRAKE.QE.E..KREKAEEKER.RKEYDALKAA | |
Retrocopy | CADTVLQHRKAVREDQELERQRQF*VEREAEKKLEAKQRAKEPQEWEAQKREKAEEKERQRKEYDALKAA |
Parental | KREQEKKPKK-ANQAPKSKSGSRPRKPPPRKHTRSWAVLKLLLLLLLFGVAGGLVACRVTE |
KREQEKKPKK..NQAPKSKSGS.P.KPPP.KHT.SWA..........F.VAGGL.ACRVTE | |
Retrocopy | KREQEKKPKKETNQAPKSKSGSHPHKPPPQKHTHSWAXXXXXXXXXXFCVAGGLFACRVTE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 22 .01 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .92 RPM |
SRP007412_heart | 0 .00 RPM | 6 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 16 .41 RPM |
SRP007412_liver | 0 .00 RPM | 19 .49 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018827 | 1 retrocopy | |
Equus caballus | ENSECAG00000018072 | 1 retrocopy | |
Homo sapiens | ENSG00000108829 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006310 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000020901 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009066 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008284 | 3 retrocopies |
retro_pabe_2687 , retro_pabe_2874, retro_pabe_2875,
|
Pan troglodytes | ENSPTRG00000009398 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000371 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000207 | 1 retrocopy |