Parental gene: | LRRC59, ENSECAG00000018072 |
| Aliases: | None |
| Description: | leucine rich repeat containing 59 [Source:HGNC Symbol;Acc:28817] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 11:26077678..26089717(-) |
>ENSECAG00000018072
AAGCTGGACGGCAACGAGCTGGACTTGAGCCTCAGCGACAATGAGGTCCCCAAGGAGCTGGCTGCCCTGCCAAAGGCCAC
TGTACTGGATCTGTCCTGCAATAAACTGACTACTCTACCGTCGGATTTCTGTGGCCTCACGCACCTGGTGAAGCTGGACC
TGAGTAAGAACAAACTGCAGCAACTGCCGGCCGACTTCGGCCGTCTGGTCAACCTCCAGCACCTGGATCTCCTCAACAAC
AGGCTGGTCACCCTGCCTGTCAGCTTTGCTCAGCTCAAGAGCCTGAAGTGGCTGGACCTGAAGGATAACCCCCTGGATCC
TGTCCTGGCCAAAGTGGCAGGCGATTGCTTGGATGAGAAGCAGTGTAAGCAGTGTGCCAGCAAGGTGTTACAGCACATGA
AGGCTGTGCAGGCGGATCAGGAGCGAGAGAGGCAGCGGCGACTAGAAGTAGAACGAGAGGCTGAGAAGAAGCGGGAGGCC
AAGCAGCGAGCTAAGGAGGCTCAGGAGCGGGAAGTACGGAAGCGGGAGAAGGCAGAAGAGAAGGAGCGCCGGAGAAAGGA
GTACGATGCCCTCAAGGCAGCCAAGCGGGAGCAGGAGAAGAAACCTAAGAAGGAAACAAATCAGGCCACAAAATCTAAGT
CTGGCTCTCGCCCACGGAAGCCACCACCCCGGAAACACACCCGGTCCTGGGCTGTGCTGAAGCTGCTGCTGCTGCTGCTG
CTGTGTGTGGCCGGTGGGCTGGTTGCTTGTCGGGTGACAGAGCTGCAGCAGCAGCCCCTCTGCACCAGCGTGAACACCAT
CTACGACAATGCGGTCCGGGGTCTGCGCAGCCACAATATCCTCCAGTGGGTCCTGCAGACCGATTCTCAGCAGTGA
AAGCTGGACGGCAACGAGCTGGACTTGAGCCTCAGCGACAATGAGGTCCCCAAGGAGCTGGCTGCCCTGCCAAAGGCCAC
TGTACTGGATCTGTCCTGCAATAAACTGACTACTCTACCGTCGGATTTCTGTGGCCTCACGCACCTGGTGAAGCTGGACC
TGAGTAAGAACAAACTGCAGCAACTGCCGGCCGACTTCGGCCGTCTGGTCAACCTCCAGCACCTGGATCTCCTCAACAAC
AGGCTGGTCACCCTGCCTGTCAGCTTTGCTCAGCTCAAGAGCCTGAAGTGGCTGGACCTGAAGGATAACCCCCTGGATCC
TGTCCTGGCCAAAGTGGCAGGCGATTGCTTGGATGAGAAGCAGTGTAAGCAGTGTGCCAGCAAGGTGTTACAGCACATGA
AGGCTGTGCAGGCGGATCAGGAGCGAGAGAGGCAGCGGCGACTAGAAGTAGAACGAGAGGCTGAGAAGAAGCGGGAGGCC
AAGCAGCGAGCTAAGGAGGCTCAGGAGCGGGAAGTACGGAAGCGGGAGAAGGCAGAAGAGAAGGAGCGCCGGAGAAAGGA
GTACGATGCCCTCAAGGCAGCCAAGCGGGAGCAGGAGAAGAAACCTAAGAAGGAAACAAATCAGGCCACAAAATCTAAGT
CTGGCTCTCGCCCACGGAAGCCACCACCCCGGAAACACACCCGGTCCTGGGCTGTGCTGAAGCTGCTGCTGCTGCTGCTG
CTGTGTGTGGCCGGTGGGCTGGTTGCTTGTCGGGTGACAGAGCTGCAGCAGCAGCCCCTCTGCACCAGCGTGAACACCAT
CTACGACAATGCGGTCCGGGGTCTGCGCAGCCACAATATCCTCCAGTGGGTCCTGCAGACCGATTCTCAGCAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 52 .79 RPM |
| SRP021940_embryo | 60 .94 RPM |
| SRP021940_cerebellum | 30 .59 RPM |
| SRP021940_testis | 74 .94 RPM |
| SRP021940_placental_villous | 34 .93 RPM |
| SRP021940_articular_cartilage | 32 .94 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000018827 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000108829 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000006310 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000020901 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000009066 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000008284 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000009398 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000000371 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000000207 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_240 | 87.41 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000018072 retrocopies