Parental gene:

RPL8, ENSCPOG00000003854

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_95:3892924..3895168(+)


>ENSCPOG00000003854
ATGGGCCGCGTGATCCGTGGACAGAGGAAGGGTGCTGGCTCTGTGTTTCGTGCGCACGTGAAGCATCGCAAGGGAGCTGC
TCGGCTACGTGCCGTGGACTTCGCAGAGCGCCACGGCTACATCAAGGGGATCGTGAAGGACATCATCCACGACCCGGGCC
GCGGCGCACCGCTCGCTAAGGTGGTCTTCCGAGATCCGTACCGATTCAAGAAGCGTACGGAGCTGTTCATCGCCGCCGAG
GGCATCCACACGGGCCAATTTGTGTACTGCGGCAAAAAGGCCCAACTCAACATTGGCAATGTTCTGCCTGTGGGCACCAT
GCCTGAGGGGACCATTGTGTGCTGCTTGGAGGAGAAGCCTGGAGACAGGGGCAAGCTGGCCCGAGCCTCTGGCAATTATG
CCACAGTCATTTCCCACAACCCTGAAACCAAGAAGACCAGAGTGAAGCTGCCCTCGGGTTCCAAGAAGGTCATCTCCTCT
GCCAACAGAGCTGTTGTTGGTGTAGTAGCTGGTGGGGGCAGAATTGATAAACCTATTTTGAAGGCTGGCCGAGCCTACCA
CAAATACAAGGCAAAGAGGAACTGCTGGCCACGTGTACGCGGTGTGGCCATGAATCCCGTGGAGCATCCCTTTGGAGGTG
GTAACCACCAGCACATTGGCAAACCCTCAACTATCCGTAGAGATGCCCCTGCAGGACGCAAAGTGGGTCTTATTGCTGCT
CGCAGGACTGGGCGACTCCGTGGAACCAAAACTGTGCAAGAGAAAGAGAATTAG

Library Parental gene expression (RPM)
SRP017611_brain 160 .13 RPM
SRP017611_kidney 262 .87 RPM
SRP017611_liver 159 .18 RPM
SRP040447_lung 425 .96 RPM
SRP040447_skeletal_muscle 388 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017933 ortholog_one2many 1 retrogene
retro_acar_31,
Bos taurus ENSBTAG00000026327 possible_ortholog 1 retrogene
retro_btau_96,
Canis familiaris ENSCAFG00000001677 ortholog_one2one 1 retrogene
retro_cfam_1132,
Callithrix jacchus ENSCJAG00000021388 ortholog_one2one 4 retrogenes
retro_cjac_1109, retro_cjac_1169, retro_cjac_1579, retro_cjac_2047,
Dasypus novemcinctus ENSDNOG00000009300 ortholog_one2one 2 retrogenes
retro_dnov_2505, retro_dnov_503,
Macaca mulatta ENSMMUG00000013379 possible_ortholog 2 retrogenes
retro_mmul_1470, retro_mmul_1531,
Mustela putorius furo ENSMPUG00000006022 possible_ortholog 1 retrogene
retro_mputfur_1517,
Nomascus leucogenys ENSNLEG00000010952 ortholog_one2one 2 retrogenes
retro_nleu_1603, retro_nleu_594,
Oryctolagus cuniculus ENSOCUG00000024716 possible_ortholog 1 retrogene
retro_ocun_146,
Rattus norvegicus ENSRNOG00000048523 possible_ortholog 2 retrogenes
retro_rnor_122, retro_rnor_239,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1006 67.90 91.05
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2. retro_cpor_1415 91.05 100.00
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Download FASTA sequences of all ENSCPOG00000003854 retrocopies