RetrogeneDB ID: | retro_ocun_146 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:26785336..26786110(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000003706 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL8 | ||
Ensembl ID: | ENSOCUG00000024716 | ||
Aliases: | None | ||
Description: | ribosomal protein L8 [Source:HGNC Symbol;Acc:10368] |
Percent Identity: | 98.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFK |
MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDF.ERHGYIKGIVKDIIHDPGRGAPLAKVVF.DPYRFK | |
Retrocopy | MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFTERHGYIKGIVKDIIHDPGRGAPLAKVVFWDPYRFK |
Parental | KRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHN |
KRTELF.AAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHN | |
Retrocopy | KRTELFMAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHN |
Parental | PETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHP |
PETKKTRVKL.SGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHP | |
Retrocopy | PETKKTRVKLLSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHP |
Parental | FGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN |
FGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN | |
Retrocopy | FGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 10 .98 RPM | 130 .35 RPM |
SRP017611_kidney | 19 .26 RPM | 239 .40 RPM |
SRP017611_liver | 5 .86 RPM | 70 .29 RPM |