RetrogeneDB ID: | retro_acar_31 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343424.1:642517..643291(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000009145 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSACAG00000017933 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.67 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGRVIRGQRKGAGSVFRAHVKHRKGAAKLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFK |
MGRVIRGQRKGAGSVFRAHVKHRKGAAKLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFK | |
Retrocopy | MGRVIRGQRKGAGSVFRAHVKHRKGAAKLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFK |
Parental | KRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHN |
K.TELFIAAEGIHT.QFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVIS.N | |
Retrocopy | KPTELFIAAEGIHTRQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISQN |
Parental | PETKKTRVKLPSGSKKVISSANRAVVGIVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHP |
PETKKTRVKL.SGSKKVISSANRAVVGIVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHP | |
Retrocopy | PETKKTRVKLLSGSKKVISSANRAVVGIVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHP |
Parental | FGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN |
FGGGNHQHIGKPSTIRRD.PAGRKVGLIAARRTGRLRGTKT.QEKEN | |
Retrocopy | FGGGNHQHIGKPSTIRRDDPAGRKVGLIAARRTGRLRGTKTIQEKEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 9 .62 RPM | 1816 .30 RPM |
SRP009831_brain | 0 .33 RPM | 289 .25 RPM |
SRP009831_dewlap | 1 .05 RPM | 371 .03 RPM |
SRP009831_embryo | 6 .61 RPM | 1047 .71 RPM |
SRP009831_heart | 1 .45 RPM | 853 .31 RPM |
SRP009831_liver | 1 .51 RPM | 852 .36 RPM |
SRP009831_lung | 1 .36 RPM | 514 .76 RPM |
SRP009831_ovary | 0 .42 RPM | 220 .57 RPM |
SRP009831_skeletal_muscle | 0 .69 RPM | 363 .27 RPM |