Parental gene: | PCMTD1, ENSCPOG00000006593 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_64:5780564..5813975(+) |
>ENSCPOG00000006593
ATGGGAGGAGCTGTGAGTGCTGGGGAAGATAATGACGACTTAATTGATAATCTTAAAGAAGCTCAGTATATCCGCACTGA
AAGAGTGGAGCAAGCTTTCAGAGCGATTGATCGAGGCGATTACTATTTGGAAGGCTACAGAGACAATGCTTACAAAGACT
TAGCCTGGAAGCATGGAAACATACACTTATCAGCACCTTGCATTTATTCTGAAGTTATGGAAGCACTGAAACTTCAACCA
GGATTATCTTTTCTTAACCTGGGAAGTGGAACCGGATATTTAAGTACAATGGTGGGCTTAATTTTAGGTCCTTTTGGAAT
AAATCATGGAATTGAACTTCATTCAGATGTGGTGGAATATGCCAAGGAAAAGCTGGAGAGTTTCATCAAAAATAGTGATA
GCTTTGATAAATTTGAGTTCTGTGAACCTGCATTTGTGGTTGGTAATTGTCTCCAAATAGCATCTGACAGTCATCAGTAT
GATCGAATTTATTGTGGAGCTGGGGTCCAGAAAGACCATGAAAACTACATGAAAATATTACTGAAAGTTGGAGGCATACT
GGTTATGCCTATAGAGGATCAGTTAACACAGATTATGCGAACTGGACAGAACACTTGGGAAAGTAAAAATATCCTTGCTG
TTTCATTTGCTCCACTTGTGCAGCCAAGTAAGAATGACAATGGCAAGCCAGATTCTGTCGGACTCCCCCCCTGTGCTGTC
AGGAATCTGCAGGACTTGGCTCGTATTTACATTCGACGCACACTTAGAAATTTCATCAATGACGAGATGCAGGCCAAGGG
GATTCCTCAAAGGGCTCCACCCAAGAGGAAAAGGAAGAGAGTTAAGCAGAGGATTAACACTTATGTGTTTGTAGGTAACC
AGCTCATTCCTCAGCCTCTAGATAGTGAGGAGGATGAGAAAATGGAAGAAGATAACAAAGAAGAGGAAGAGAAAGATCAC
AGTGAAGCCATGAAGCCGGAGGAGCCACCTCAAAATTTACTGAGAGAAAAAATCATGAAGCTACCCCTCCCTGAATCTTT
AAAAGCTTACTTGACATATTTTAGAGACAAATAA
ATGGGAGGAGCTGTGAGTGCTGGGGAAGATAATGACGACTTAATTGATAATCTTAAAGAAGCTCAGTATATCCGCACTGA
AAGAGTGGAGCAAGCTTTCAGAGCGATTGATCGAGGCGATTACTATTTGGAAGGCTACAGAGACAATGCTTACAAAGACT
TAGCCTGGAAGCATGGAAACATACACTTATCAGCACCTTGCATTTATTCTGAAGTTATGGAAGCACTGAAACTTCAACCA
GGATTATCTTTTCTTAACCTGGGAAGTGGAACCGGATATTTAAGTACAATGGTGGGCTTAATTTTAGGTCCTTTTGGAAT
AAATCATGGAATTGAACTTCATTCAGATGTGGTGGAATATGCCAAGGAAAAGCTGGAGAGTTTCATCAAAAATAGTGATA
GCTTTGATAAATTTGAGTTCTGTGAACCTGCATTTGTGGTTGGTAATTGTCTCCAAATAGCATCTGACAGTCATCAGTAT
GATCGAATTTATTGTGGAGCTGGGGTCCAGAAAGACCATGAAAACTACATGAAAATATTACTGAAAGTTGGAGGCATACT
GGTTATGCCTATAGAGGATCAGTTAACACAGATTATGCGAACTGGACAGAACACTTGGGAAAGTAAAAATATCCTTGCTG
TTTCATTTGCTCCACTTGTGCAGCCAAGTAAGAATGACAATGGCAAGCCAGATTCTGTCGGACTCCCCCCCTGTGCTGTC
AGGAATCTGCAGGACTTGGCTCGTATTTACATTCGACGCACACTTAGAAATTTCATCAATGACGAGATGCAGGCCAAGGG
GATTCCTCAAAGGGCTCCACCCAAGAGGAAAAGGAAGAGAGTTAAGCAGAGGATTAACACTTATGTGTTTGTAGGTAACC
AGCTCATTCCTCAGCCTCTAGATAGTGAGGAGGATGAGAAAATGGAAGAAGATAACAAAGAAGAGGAAGAGAAAGATCAC
AGTGAAGCCATGAAGCCGGAGGAGCCACCTCAAAATTTACTGAGAGAAAAAATCATGAAGCTACCCCTCCCTGAATCTTT
AAAAGCTTACTTGACATATTTTAGAGACAAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 103 .25 RPM |
| SRP017611_kidney | 103 .85 RPM |
| SRP017611_brain | 28 .18 RPM |
| SRP040447_lung | 55 .28 RPM |
| SRP040447_skeletal_muscle | 30 .34 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Monodelphis domestica | ENSMODG00000009645 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000016958 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_63 | 66.39 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000006593 retrocopies