Parental gene:

UBFD1, ENSCPOG00000006872

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_4:39991564..40004026(+)


>ENSCPOG00000006872
GCAGGGGCCGGGCCGGGGAAGCGGAGGAGGCGGGTCTCCATAGAAACCTCCACCTGTTTCCGGCCAGCCTGTGCAAGATT
AGGGGCTGCTGCGGGGGCCAATCTCAGTCGGTTCGCTTCTTCCCGGCGGCCTCTGCGTGAGCGGTGGGTGTTGTACACAA
TCATCATGGCGGCTGCCGGGGCCCCGGATGGCATGGAGGAGTCTGGCATGGACACCGAGGCCGAGACGGTAGTCACCGAG
GCGCCCGCGCGGCAGCTCAACTGCGTAGAGGCCGAAGCGGCGGCGGGGGCGGCTCCCGAGGACTACTGCGACGCGCGAGA
CAACCTGCAGCCTGCCCCTGCCCAGCCCCCTGGGGACTCCGCGGCCCAGGCCTCGGTCAGCAACGGCGAGGACGCAGGCG
GCGGTGCGGGCAGAGAGCTGGAGCTGGTGGACCTGAAGATCATCTGGAACAAGACCAAGCACGACGTGAAGGTTCCTCTG
GACAGCACAGGTTCCGAGCTGAAACAGAAGATTCACTCCATTACAGGACTCCCACCTGCCATGCAAAAGGTCATGTATAA
GGGGCTTGTCCCTGAAGATAAGACGTTGAGGGAAATAAAAGTGACCAGTGGGGCCAAGATCATGGTGGTTGGCTCCACGA
TAAATGATGTTTTAGCAGTAAACACACCCAAAGATGCTTCGCAACAGGATGCAAAGGCTGAAGAGAACAAGAAAGAGCCT
CTCTGCCGGCAGAAACAACACAGGAAAGTGTTGGATAAAGGAAAACCTGAAGATGTGATGCCTTCTGTTAAGGGTGTCCA
GGAGCGCCTGCCAGCGGTACCTTTGTCTGGCATGTACAATAAGTCTGGAGGAAAAGTGAGACTCACCTTTAAGCTAGAAC
AAGACCAGCTGTGGATTGGCACTAAAGAACGGACTGAGAAATTGCCCATGGGCTCCATTAAAAATGTGGTCAGTGAACCT
ATTGAAGGACATGAGGACTACCACATGATGGCGTTTCAGTTGGGCCCCACGGAAGCCTCTTACTACTGGGTGTACTGGGT
TCCAACTCAATATGTGGATGCAATCAAAGACACTGTGCTGGGCAAATGGCAGTATTTTTGA

Library Parental gene expression (RPM)
SRP017611_brain 16 .05 RPM
SRP017611_kidney 27 .53 RPM
SRP017611_liver 17 .50 RPM
SRP040447_lung 17 .18 RPM
SRP040447_skeletal_muscle 22 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000029331 ortholog_one2one 2 retrogenes
retro_acar_106, retro_acar_204,
Callithrix jacchus ENSCJAG00000020614 possible_ortholog 1 retrogene
retro_cjac_372,
Monodelphis domestica ENSMODG00000006727 ortholog_one2one 2 retrogenes
retro_mdom_1162, retro_mdom_1298,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_292 91.10 90.71
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2. retro_cpor_635 68.52 71.86
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Download FASTA sequences of all ENSCPOG00000006872 retrocopies